HHsearch alignment for GI: peg_472 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28  E-value=1.1e-11  Score=106.21  Aligned_cols=183  Identities=23%  Similarity=0.298  Sum_probs=120.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD----   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d----   76 (369)
T Consensus       189 vIGRd~EI~r~iqIL~Rr~KNN-PiLVGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~  243 (852)
T TIGR03345       189 VLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIA------------------------AGDVPPALRN  243 (852)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHHC
T ss_conf             8694999999999998624799-74657999879999999999997------------------------6999867743


Q ss_pred             --CCCCC------CCCCCC-HH-HHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf             --22245------332233-45-55665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4   77 --VVELD------AASHTS-ID-DVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK  138 (369)
Q Consensus        77 --~~e~~------~~s~~~-id-~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~  138 (369)
T Consensus       244 ~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~---~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLar--Gelr  318 (852)
T TIGR03345       244 VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASP---QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELR  318 (852)
T ss_pred             CEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf             856786788886403576359999999999998489---97699963487752899888862278875178737--8734


Q ss_pred             EEEEECCCC--CCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCCC------CH
Q ss_conf             466506754--330---35675433321024540013567876431----0134562566445653167642------00
Q 537021.9.peg.4  139 FIFATTEIR--KIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGSA------RD  203 (369)
Q Consensus       139 fil~t~~~~--~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gsl------R~  203 (369)
T Consensus       319 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~LPDK  398 (852)
T TIGR03345       319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK  398 (852)
T ss_pred             EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             99835789998886426889962475527999879999999987999855479687089999999998721554558427


Q ss_pred             HHHCCCCCCC
Q ss_conf             1100011100
Q 537021.9.peg.4  204 GLSLLDQAIA  213 (369)
Q Consensus       204 Al~lLeq~i~  213 (369)
T Consensus       399 AIDLlDeA~A  408 (852)
T TIGR03345       399 AVSLLDTACA  408 (852)
T ss_pred             HHHHHHHHHH
T ss_conf             8999999999