HHsearch alignment for GI: peg_472 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.71  E-value=3e-07  Score=73.56  Aligned_cols=131  Identities=18%  Similarity=0.312  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             92848999999999982876-------7-0620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII--   70 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~--   70 (369)
T Consensus       568 ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR--~D-MSEy~E~hsvsrL  644 (852)
T TIGR03345       568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLIT--IN-MSEFQEAHTVSRL  644 (852)
T ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE--EC-CHHHCCHHHHHHH
T ss_conf             72849999999999999871799999985689987899877899999999997198611478--42-2432104368786


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
T Consensus       645 iGaPPGYV--------Gy~eGG~LTe~Vrr~Pys----VvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtII  712 (852)
T TIGR03345       645 KGSPPGYV--------GYGEGGVLTEAVRRKPYS----VVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVI  712 (852)
T ss_pred             CCCCCCCC--------CCCCCCHHHHHHHHCCCE----EEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECEEEEE
T ss_conf             38999766--------748777210988809986----888611300288999999987246777579999884521299


Q ss_pred             EEEECCCC
Q ss_conf             66506754
Q 537021.9.peg.4  140 IFATTEIR  147 (369)
Q Consensus       140 il~t~~~~  147 (369)
T Consensus       713 ImTS-N~G  719 (852)
T TIGR03345       713 LLTS-NAG  719 (852)
T ss_pred             EECC-CHH
T ss_conf             9757-244