HHsearch alignment for GI: peg_472 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=3.4e-11 Score=102.68 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
T Consensus 175 viGRd~Ei~r~i~IL~Rr~KNN-piLVGepGVGKTAIvEGLA~rI------------------------~~g~VP~~L~~ 229 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRI------------------------VNGDVPESLKN 229 (852)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHHH------------------------HCCCCCHHHHH
T ss_conf 7383699999999998732489-7212799987999999999998------------------------66999978851
Q ss_pred --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4 77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK 138 (369)
Q Consensus 77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~ 138 (369)
T Consensus 230 ~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~---~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLar--Gelr 304 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSE---GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELH 304 (852)
T ss_pred CCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf 851275288775215300789999999999998589---98799961255532688766641067774378747--9855
Q ss_pred EEEEECCC--CCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCC------CCCH
Q ss_conf 46650675--4330---35675433321024540013567876431----01345625664456531676------4200
Q 537021.9.peg.4 139 FIFATTEI--RKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDG------SARD 203 (369)
Q Consensus 139 fil~t~~~--~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~G------slR~ 203 (369)
T Consensus 305 ~IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPDK 384 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 99827899999883226889973771204799868999999976999976279267399999999971346677889618
Q ss_pred HHHCCCCCCCH
Q ss_conf 11000111000
Q 537021.9.peg.4 204 GLSLLDQAIAR 214 (369)
Q Consensus 204 Al~lLeq~i~~ 214 (369)
T Consensus 385 AIDlLDeA~a~ 395 (852)
T TIGR03346 385 AIDLIDEAAAR 395 (852)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998