HHsearch alignment for GI: peg_472 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.17 E-value=1.1e-09 Score=91.65 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=126.7
Q ss_pred CC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 28-48999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 2 IG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 2 iG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
T Consensus 19 ~~~N~~~~~~l~~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-------------------------~~~yl 72 (226)
T TIGR03420 19 AGGNAELLAALRQLAAGKGD-RFLYLWGESGSGKSHLLQAACAAAEERGK-------------------------SAIYL 72 (226)
T ss_pred CCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCC-------------------------CEEEE
T ss_conf 58679999999987646688-86999899999889999999999862699-------------------------57995
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHH
Q ss_conf 533223345556655544565420465237751156648--001678999997212-21114665067-543---30356
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITV 153 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI 153 (369)
T Consensus 73 ~~~~--~~~~~~~~l~~l------~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL 144 (226)
T TIGR03420 73 PLAE--LAQADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred CHHH--HHHHHHHHHHHC------CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHH
T ss_conf 2999--877539999727------44899999663334378378999999999998652828986788823203201779
Q ss_pred HHH---HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHHHHC
Q ss_conf 754---3332102454001356787643101345625664456531676420011000111000---0001210322000
Q 537021.9.peg.4 154 LSR---CQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSVRLM 227 (369)
Q Consensus 154 ~SR---cq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v~~l 227 (369)
T Consensus 145 ~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kev 224 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEV 224 (226)
T ss_pred HHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99996885685279999999999999999859988999999999863798999999999999999980899999999998
Q ss_pred C
Q ss_conf 1
Q 537021.9.peg.4 228 L 228 (369)
Q Consensus 228 l 228 (369)
T Consensus 225 L 225 (226)
T TIGR03420 225 L 225 (226)
T ss_pred H
T ss_conf 4