HHsearch alignment for GI: peg_472 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.61 E-value=0.011 Score=39.83 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=24.8
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 899889999889999999999798979685