HHsearch alignment for GI: peg_472 and conserved domain: cd01125
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.69 E-value=0.94 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 0107879888899999999961468
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
T Consensus 5 ~l~g~gG~GKS~lal~lAl~vA~G~ 29 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGK 29 (239)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 9980899888999999999997599