HHsearch alignment for GI: peg_472 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.96  E-value=0.029  Score=36.78  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP  102 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p  102 (369)
T Consensus        27 iv~ilGpNGaGKSTllk~i~G~l~p~~G~i~-----~~g~-------~~~~~pq~~~LSGGq-----rQRv~i----Ara   85 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-----WDGI-------TPVYKPQYIDLSGGE-----LQRVAI----AAA   85 (177)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCEE-----ECCC-------CEECCCCCCCCCHHH-----HHHHHH----HHH
T ss_conf             9999899999999999999688678899466-----6686-------122155515079899-----999999----999


Q ss_pred             HCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCC--CCCEEEEECCCC
Q ss_conf             20465237751156-6480016789999972122--111466506754
Q 537021.9.peg.4  103 ISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPP--HVKFIFATTEIR  147 (369)
Q Consensus       103 ~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~--~~~fil~t~~~~  147 (369)
T Consensus        86 l~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl~  133 (177)
T cd03222          86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA  133 (177)
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             823999999748865389999999999999999965977999858899