HHsearch alignment for GI: peg_472 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.86 E-value=0.0069 Score=41.42 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=53.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH------
Q ss_conf 62010787988889999999996146877788665878999779999779877822245332233455566555------
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIID------ 96 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~------ 96 (369)
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~-----~~~~i---~~v~Q~~~l~~---------~tl~e~l~~p~~~~ 91 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMP-----EGEDL---LFLPQRPYLPL---------GTLREQLIYPWDDV 91 (166)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEC-----CCCCE---EEECCCCCCCC---------CCHHHHHHCCCCCC
T ss_conf 999995899988999999869876998679976-----99879---99856466588---------75999963615467
Q ss_pred -------HHHH-HHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf -------4456-5420465237751156-6480016789999972122111466506754
Q 537021.9.peg.4 97 -------QIYY-KPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 97 -------~~~~-~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
T Consensus 92 LSGGqkQRvalARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~--~Tvi~VtH~~~ 149 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPS 149 (166)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 89999999999999964999999758533289999999999999779--98999943469