HHsearch alignment for GI: peg_472 and conserved domain: cd04154
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.23 E-value=0.55 Score=27.41 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID 89 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id 89 (369)
T Consensus 4 ~~~~~~~~~~~~K-ililG~~~sGKTsll~~l~----~~~~~~~~pT~G~~-----~~~~~~~~-~~l~iwD~~---G~e 69 (173)
T cd04154 4 IIRKQKLKEREMR-ILILGLDNAGKTTILKKLL----GEDIDTISPTLGFQ-----IKTLEYEG-YKLNIWDVG---GQK 69 (173)
T ss_pred HHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHC----CCCCCCCCCCCCEE-----EEEEEECC-EEEEEEECC---CCC
T ss_conf 7766554457318-9999899978899999983----99989726705777-----89999899-999999668---860
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-CHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 5566555445654204652377511566480-0167899999721-2211146650675433035675433321024540
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLST-AAFNGLLKTLEEP-PPHVKFIFATTEIRKIPITVLSRCQRFDLHRISI 167 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-~a~NaLLK~lEEP-p~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~ 167 (369)
T Consensus 70 ~~~~~~~~-y~~~--a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl-~------------~~~~~ 133 (173)
T cd04154 70 TLRPYWRN-YFES--TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL-P------------GALSE 133 (173)
T ss_pred CCCHHHHH-HHCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C------------CCCCH
T ss_conf 20058999-7226--6538999855657889999999999986354159847999876567-7------------78899
Q ss_pred HHHHHHHH
Q ss_conf 01356787
Q 537021.9.peg.4 168 GDLIELFT 175 (369)
Q Consensus 168 ~~i~~~L~ 175 (369)
T Consensus 134 ~ei~~~l~ 141 (173)
T cd04154 134 EEIREALE 141 (173)
T ss_pred HHHHHHHH
T ss_conf 99999986