HHsearch alignment for GI: peg_472 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.47 E-value=0.34 Score=28.97 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=64.5
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798-77822245332233455566555445654
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDVVELDAASHTSIDDVREIIDQIYYKP 102 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~~e~~~~s~~~id~ir~l~~~~~~~p 102 (369)
T Consensus 2 ililGLd~aGKTTil~~l~----~~~~~~~~PT~G~~~-----~~~~~~~~~l~~~Dlg-----G~~~~R~lW~~Y~-~- 65 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ----GEIPKKVAPTVGFTP-----TKLRLDKYEVCIFDLG-----GGANFRGIWVNYY-A- 65 (167)
T ss_pred EEEEEECCCCHHHHHHHHC----CCCCCCCCCCCCCCE-----EEEEECCEEEEEEECC-----CCHHHHHHHHHHC-C-
T ss_conf 8999008998899999982----899876508777317-----9999899999999899-----8778889999873-4-
Q ss_pred HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 20465237751156648-00167899999721221114665067543303567543332102454001356787
Q 537021.9.peg.4 103 ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFT 175 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~ 175 (369)
T Consensus 66 -~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~------------~a~~~~ei~~~L~ 126 (167)
T cd04161 66 -EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK------------NALLGADVIEYLS 126 (167)
T ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCC------------CCCCHHHHHHHHC
T ss_conf -776579998557588999999999999658877899599998865761------------5899999998819