HHsearch alignment for GI: peg_472 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.91 E-value=1.5e-08 Score=83.23 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=116.1
Q ss_pred CCC--HHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 928--48999999999982-876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIG--QKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiG--q~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
T Consensus 11 ~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~----y---l~~~~~~~~-~--- 79 (219)
T pfam00308 11 VIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVV----Y---LTSEEFLND-F--- 79 (219)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE----E---EEHHHHHHH-H---
T ss_conf 2368389999999999967587678269988999988899999999999849998288----8---439999998-8---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CC---CCC
Q ss_conf 224533223345556655544565420465237751156648--001678999997212-21114665067-54---330
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IR---KIP 150 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~---~ll 150 (369)
T Consensus 80 --~~~l~~~~~~~f~~---------~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~ 148 (219)
T pfam00308 80 --VDALRDNKIEAFKK---------SYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFE 148 (219)
T ss_pred --HHHHHCCCHHHHHH---------HHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf --99998188889999---------9763233652236765686478999999999999729869997799810024532
Q ss_pred HHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH
Q ss_conf 3567543---3321024540013567876431013456256644565316764200110001110000
Q 537021.9.peg.4 151 ITVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC 215 (369)
Q Consensus 151 ~TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~ 215 (369)
T Consensus 149 ~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~ 216 (219)
T pfam00308 149 DRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFA 216 (219)
T ss_pred HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 77999986875661169999999999999999849999999999999842798999999999999855