HHsearch alignment for GI: peg_472 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.51 E-value=5.6e-13 Score=115.90 Aligned_cols=197 Identities=15% Similarity=0.200 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC-C
Q ss_conf 999999999982876706201078798888999999999614687778866587899977999977987782224533-2
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA-S 84 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~-s 84 (369)
T Consensus 30 eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~-~~~~~~~q------~~d~~g~~~~~~ 102 (490)
T pfam03215 30 EVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL-HNPDNECQ------KPDFRGDCIVNS 102 (490)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC-CCCCCHHH------CCCCCCCCCCCC
T ss_conf 99999999854777731899879899889999999999759689981486545-67750221------012123457666
Q ss_pred CCCHHHHHHHHHHH-HH---HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----CCCCCEEEEE-------CCCC-
Q ss_conf 23345556655544-56---542046523775115664800167899999721-----2211146650-------6754-
Q 537021.9.peg.4 85 HTSIDDVREIIDQI-YY---KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----PPHVKFIFAT-------TEIR- 147 (369)
Q Consensus 85 ~~~id~ir~l~~~~-~~---~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----p~~~~fil~t-------~~~~- 147 (369)
T Consensus 103 ~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~ 182 (490)
T pfam03215 103 LSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDR 182 (490)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 63777767887622335654457887359999658874423669999999999970899987999970466667764332
Q ss_pred -------CCCHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf -------33035675433--32102454001356787643101345---6256644565316764200110001
Q 537021.9.peg.4 148 -------KIPITVLSRCQ--RFDLHRISIGDLIELFTKILQEESIE---FDPEAVAMIARASDGSARDGLSLLD 209 (369)
Q Consensus 148 -------~ll~TI~SRcq--~~~f~~l~~~~i~~~L~~i~~~E~i~---~d~~~l~~ia~~s~GslR~Al~lLe 209 (369)
T Consensus 183 ~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQ 256 (490)
T pfam03215 183 FGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSAINSLQ 256 (490)
T ss_pred CCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 32107863598887088963698688878899999999999857655675203899999864872999999999