HHsearch alignment for GI: peg_472 and conserved domain: pfam03215

>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.51  E-value=5.6e-13  Score=115.90  Aligned_cols=197  Identities=15%  Similarity=0.200  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC-C
Q ss_conf             999999999982876706201078798888999999999614687778866587899977999977987782224533-2
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA-S   84 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~-s   84 (369)
T Consensus        30 eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~-~~~~~~~q------~~d~~g~~~~~~  102 (490)
T pfam03215        30 EVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL-HNPDNECQ------KPDFRGDCIVNS  102 (490)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC-CCCCCHHH------CCCCCCCCCCCC
T ss_conf             99999999854777731899879899889999999999759689981486545-67750221------012123457666


Q ss_pred             CCCHHHHHHHHHHH-HH---HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----CCCCCEEEEE-------CCCC-
Q ss_conf             23345556655544-56---542046523775115664800167899999721-----2211146650-------6754-
Q 537021.9.peg.4   85 HTSIDDVREIIDQI-YY---KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----PPHVKFIFAT-------TEIR-  147 (369)
Q Consensus        85 ~~~id~ir~l~~~~-~~---~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----p~~~~fil~t-------~~~~-  147 (369)
T Consensus       103 ~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~  182 (490)
T pfam03215       103 LSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDR  182 (490)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             63777767887622335654457887359999658874423669999999999970899987999970466667764332


Q ss_pred             -------CCCHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf             -------33035675433--32102454001356787643101345---6256644565316764200110001
Q 537021.9.peg.4  148 -------KIPITVLSRCQ--RFDLHRISIGDLIELFTKILQEESIE---FDPEAVAMIARASDGSARDGLSLLD  209 (369)
Q Consensus       148 -------~ll~TI~SRcq--~~~f~~l~~~~i~~~L~~i~~~E~i~---~d~~~l~~ia~~s~GslR~Al~lLe  209 (369)
T Consensus       183 ~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQ  256 (490)
T pfam03215       183 FGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSAINSLQ  256 (490)
T ss_pred             CCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             32107863598887088963698688878899999999999857655675203899999864872999999999