HHsearch alignment for GI: peg_472 and conserved domain: pfam05729

>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.07  E-value=0.0024  Score=44.85  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC----CCCCCCCHHHHHHHHHHHH
Q ss_conf             201078798888999999999614687778866587899977999977987782224----5332233455566555445
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL----DAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~----~~~s~~~id~ir~l~~~~~   99 (369)
T Consensus         3 i~i~G~aG~GKTtll~kl~~~wa--~g~~~~-~-~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~---~~~~~   75 (165)
T pfam05729         3 VILQGEAGSGKTTLLQKLALLWA--QGKLPQ-D-FDFVFFLPCRELSRSGEASLADLLFSQWPEPAAPVSEV---WAVIL   75 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--CCCCCC-C-CCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHH---HHHHH
T ss_conf             99982798989999999999998--698436-9-72899999567077766899999998767745763789---99998


Q ss_pred             HHHHCCCCCEEEEECHHHCCCC--------HHHH-HHHHHHHC-CCCCCEEEEECCCCCC--CHHHHHHHHHHHCCCCCC
Q ss_conf             6542046523775115664800--------1678-99999721-2211146650675433--035675433321024540
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLSTA--------AFNG-LLKTLEEP-PPHVKFIFATTEIRKI--PITVLSRCQRFDLHRISI  167 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~~--------a~Na-LLK~lEEP-p~~~~fil~t~~~~~l--l~TI~SRcq~~~f~~l~~  167 (369)
T Consensus        76 ---~~~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~~-~vliTsRp~~~~~l~~~~~~~~~~ei~GFs~  151 (165)
T pfam05729        76 ---ELPERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPGA-SLLLTSRPDALRDLRRGLEEPRYLEVLGFSE  151 (165)
T ss_pred             ---HCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHCCCCCEEEECCCCH
T ss_conf             ---397728999648455144435644457799999999841527886-4999968037988577648871899889999


Q ss_pred             HHHHHHHHHH
Q ss_conf             0135678764
Q 537021.9.peg.4  168 GDLIELFTKI  177 (369)
Q Consensus       168 ~~i~~~L~~i  177 (369)
T Consensus       152 ~~~~~yi~~~  161 (165)
T pfam05729       152 EDRKQYVRKY  161 (165)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999986