HHsearch alignment for GI: peg_472 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.46 E-value=0.078 Score=33.66 Aligned_cols=195 Identities=18% Similarity=0.147 Sum_probs=88.0
Q ss_pred CCHHHHHHHHH----HHHHCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 28489999999----99982876-70620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 2 IGQKPMIKTLT----NAFKSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 2 iGq~~~~~~l~----~~~~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
T Consensus 61 fGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y----~~Y~i~g---sP------m~e~PL 127 (358)
T pfam08298 61 FGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELV----PIYALKG---SP------VFESPL 127 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC----CEEEECC---CC------CCCCCC
T ss_conf 0159999999999999972367210589997789877589999999872058----6488448---97------778985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 22245332233455566555445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
T Consensus 128 ~L-~------~p~~~r~~le~~~gi~---~~--~-i~g--~l~P~~----~~rL~e~~Gd~~~~----~V~r~~~S~~~r 184 (358)
T pfam08298 128 HL-F------NPHHLRDILEDEYGIP---RR--R-LEG--DLSPWC----TKRLEEFGGDIEKF----KVVKIFPSILRQ 184 (358)
T ss_pred CC-C------CHHHHHHHHHHHHCCC---HH--H-CCC--CCCHHH----HHHHHHHCCCHHHE----EEEEECCCCCCC
T ss_conf 47-7------8677599999874995---21--2-089--889899----99999938985527----899955560045
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCH
Q ss_conf 33321024540--0135678764310134562566445653167642001100011100000-01210322000135677
Q 537021.9.peg.4 157 CQRFDLHRISI--GDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADR 233 (369)
Q Consensus 157 cq~~~f~~l~~--~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~ 233 (369)
T Consensus 185 ~gi~t~~P~D~~nqD~s~L~G----~-------vdi~kl~~~~~~dP~-a~~~~-G~l~~aNrGl~efvE~~----K~~~ 247 (358)
T pfam08298 185 IGIAKTEPGDENNQDISALVG----K-------VDIRKLEEYSQNDPD-AYSYS-GALNRANQGLMEFVEMF----KAPI 247 (358)
T ss_pred EEEEEECCCCCCCCCHHHHHH----H-------HHHHHHHHHCCCCCC-EECCC-CCEECCCCCCEEEHHHH----CCCH
T ss_conf 689996899987633778743----3-------209877410447984-24567-70000357755409876----1829
Q ss_pred HHHHHHHHHHHCCCHH
Q ss_conf 7778888763013633
Q 537021.9.peg.4 234 NRIMDLFGYLIKGDII 249 (369)
Q Consensus 234 ~~i~~Ll~ai~~~d~~ 249 (369)
T Consensus 248 ~~L~~lL~atQE~~i~ 263 (358)
T pfam08298 248 KVLHPLLTATQEGNYN 263 (358)
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 9999985221246224