HHsearch alignment for GI: peg_472 and conserved domain: pfam08542
>pfam08542 Rep_fac_C Replication factor C. This family includes several subunits of DNA replication factor C.
Probab=95.63 E-value=0.2 Score=30.65 Aligned_cols=88 Identities=8% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 35677777888876301363346788765-43047621357877753489999997457412234499889999999986
Q 537021.9.peg.4 229 ALADRNRIMDLFGYLIKGDIINVLQEFSS-QYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK 307 (369)
Q Consensus 229 g~~~~~~i~~Ll~ai~~~d~~~al~~l~~-l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~ 307 (369)
T Consensus 1 g~p~p~~I~~il~~~~~~~f~~a~~~i~~~~~~~G~s~~Dii~~l~~~i~~~---------------------------- 52 (90)
T pfam08542 1 GVPPPEDIKEILESCLNGDFEEAYKTLRELLIEKGYSAEDIITQLHRVLKTL---------------------------- 52 (90)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----------------------------
T ss_conf 9889899999999998099999999999999985999999999999999873----------------------------
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2998999999999999999830278889999999999
Q 537021.9.peg.4 308 EVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIR 344 (369)
Q Consensus 308 ~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlk 344 (369)
T Consensus 53 ~~~~~~k~~il~~la~~e~rL~~G~~e~lQL~al~a~ 89 (90)
T pfam08542 53 DIPESLKLELLKELGEIEYRLSDGASEYIQLSALLAA 89 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8999999999999999999998279779899999860