HHsearch alignment for GI: peg_472 and conserved domain: pfam09115
>pfam09115 DNApol3-delta_C DNA polymerase III, delta subunit, C terminal. Members of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp loader.
Probab=95.17 E-value=0.33 Score=29.00 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=79.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 78888763013633467887654304762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4 236 IMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS 315 (369)
Q Consensus 236 i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~ 315 (369)
T Consensus 12 ~~~l~~~l~~~d~l~ll~~l~-----~~~~~~~L~WL~~lL~DalK~q~---g~~~~~vn~D~~~li~~lA~~~s~~~L~ 83 (119)
T pfam09115 12 CRAFWNFLKSPDPLSLLPLLN-----KEDALQRLHWLWSLLLDALKWQQ---GVSKFLINQDQIPLIQQLAERLSSEKLL 83 (119)
T ss_pred HHHHHHHHCCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999982799999978857-----22167889999999999999983---7644014677899999999888999999
Q ss_pred HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
Q ss_conf 9999999999983027--8889999999999953
Q 537021.9.peg.4 316 RFWQMILKGISEIEGF--SRPMEAVEMVLIRLAH 347 (369)
Q Consensus 316 ~~lq~l~~a~~~Lk~n--~np~L~lE~lLlkL~~ 347 (369)
T Consensus 84 ~~~~~~~~~r~qL~~~~glN~ELlL~~~Ll~we~ 117 (119)
T pfam09115 84 AQLQKLLHLREQLQSVPGLNRELLLTEWLLRWEE 117 (119)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999998638874799999999999987