HHsearch alignment for GI: peg_472 and conserved domain: pfam09439
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=93.04 E-value=0.39 Score=28.53 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=59.7
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHH
Q ss_conf 062010787988889999999996146877788665878999779999779877822245332233455566-5554456
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE-IIDQIYY 100 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~-l~~~~~~ 100 (369)
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~---~~~~~~T-~tS~~~n~-~~~~~-~~~~~~~~lv--D~P---Gh~klR~~~~~~~~~ 72 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLT---TGSVRKT-VTSQEPSA-AYKYM-NNKGNSLTLI--DFP---GHVKLRYKLLETLKD 72 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCE-ECCCCCCC-EEEEE-CCCCCEEEEE--ECC---CCHHHHHHHHHHHHH
T ss_conf 869998689998999999997---5994875-88867864-06875-1689668999--889---968999999986430
Q ss_pred HHHCCCCCEEEEECH-H--HCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 542046523775115-6--648001678999997---2122111466506754330356754333210245400135678
Q 537021.9.peg.4 101 KPISARFRVYIMDEV-Q--MLSTAAFNGLLKTLE---EPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 101 ~p~~~~~kv~iid~a-~--~m~~~a~NaLLK~lE---EPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
T Consensus 73 ~~-~~~gIVfVVDS~~~~~~l-~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl-------------~~A~~~~~Ik~~L 137 (181)
T pfam09439 73 SS-SLRGLVFVVDSTAFPKEV-TDTAEFLYDILSITELLKNGIDILIACNKQEI-------------FTARPPKKIKQAL 137 (181)
T ss_pred HC-CCEEEEEEEECCCCHHHH-HHHHHHHHHHHHCHHHCCCCCCEEEEEECCCC-------------CCCCCHHHHHHHH
T ss_conf 02-644999999786656679-99999999998445433689978999737463-------------3577999999999
Q ss_pred HH
Q ss_conf 76
Q 537021.9.peg.4 175 TK 176 (369)
Q Consensus 175 ~~ 176 (369)
T Consensus 138 Ek 139 (181)
T pfam09439 138 EK 139 (181)
T ss_pred HH
T ss_conf 99