Query 537021.9.peg.473_1 Match_columns 165 No_of_seqs 132 out of 531 Neff 4.7 Searched_HMMs 23785 Date Wed May 25 00:15:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2aya_A DNA polymerase III subu 61.5 8.8 0.00037 18.3 4.6 67 66-133 25-95 (128) 2 1mgp_A Hypothetical protein TM 28.4 31 0.0013 15.1 3.9 97 62-162 165-289 (313) 3 2noj_B EFB homologous protein; 24.6 23 0.00096 15.8 1.3 32 64-95 29-60 (80) 4 2jsx_A Protein NAPD; TAT, proo 17.2 47 0.002 14.0 1.6 14 143-156 21-34 (95) 5 2zq5_A Putative uncharacterize 17.0 53 0.0022 13.7 3.0 21 143-163 238-258 (384) 6 3cnv_A Putative GNTR-family tr 15.9 57 0.0024 13.5 2.0 46 113-161 88-133 (162) 7 3fdj_A DEGV family protein; GU 13.9 64 0.0027 13.2 5.3 97 62-162 137-258 (278) 8 1wzu_A Quinolinate synthetase 12.6 70 0.003 13.0 4.3 48 111-158 147-195 (300) 9 3db7_A Putative calcium-regula 12.3 72 0.003 12.9 3.1 21 142-162 80-100 (127) 10 2gom_A Fibrinogen-binding prot 12.3 72 0.003 12.9 2.0 30 65-94 11-40 (61) No 1 >2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli} Probab=61.50 E-value=8.8 Score=18.27 Aligned_cols=67 Identities=12% Similarity=-0.026 Sum_probs=48.0 Q ss_pred HHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCC----CCHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 999999861826679999726400450498089997789----99779999999999860992599996897 Q 537021.9.peg.4 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE----IPEDFIENLATKLKNWTGEDWEIRFSLGR 133 (165) Q Consensus 66 ~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~----a~~~l~~~Ls~~L~~wTG~rW~VslS~g~ 133 (165) +=..++..-.=-.+..+|=.+.-+.++ .+.+.+.+.+. .+.....+|+..|.++-|+...|.+..|. T Consensus 25 ~W~~lv~~L~L~G~~~qLA~n~~l~~~-~~~~~L~l~~~~~~L~~~~~~~~L~~aLs~~~g~~i~l~I~~g~ 95 (128) T 2aya_A 25 PWAAQVSQLSLPKLVEQVALNAWKEES-DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 95 (128) T ss_dssp HHHHHHHHHTCCSHHHHHHHTEEEEEC-SSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEECC T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 079999986982899999984376400-88589998877665568999999999999997898478998788 No 2 >1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A* Probab=28.39 E-value=31 Score=15.07 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=56.5 Q ss_pred CCHHHHHHHHHHC---CHHH-------HHHHHHHCCC----------------CEEECCCEEEEEECCCCCHHHHHHHHH Q ss_conf 4489999999861---8266-------7999972640----------------045049808999778999779999999 Q 537021.9.peg.4 62 NYTKQLIELCEKN---HDYK-------MVEMLQRFLH----------------VVSFELGRLEVSFLKEIPEDFIENLAT 115 (165) Q Consensus 62 nsf~~lveL~~~~---rei~-------Lk~~Le~~Vr----------------LVsFe~GrIei~~~~~a~~~l~~~Ls~ 115 (165) .+|+++++.+++. .++. |.| |.+.-| +++|+.|.++..-.-..-+.-...+-. T Consensus 165 ~s~eeI~~~l~~~~~~~~~~~~f~v~~L~~-L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~~~K~Rg~kka~~~l~~ 243 (313) T 1mgp_A 165 ATIEEVLKKLDERMKNKDFKAIFYVSNFDY-LVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIE 243 (313) T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCTHH-HHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCEEEEEEEECCHHH-HHHCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEEECHHHHHHHHHH T ss_conf 999999999999874370699999588999-9868950689999986107269999709748997554008899999999 Q ss_pred HHHHHCCCCEE--EEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC Q ss_conf 99986099259--999689741366539699999986799778987745 Q 537021.9.peg.4 116 KLKNWTGEDWE--IRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162 (165) Q Consensus 116 ~L~~wTG~rW~--VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~ 162 (165) .+.+..+.... |.++.+...+. ++.+.+.+.+.||+.++. +.++ T Consensus 244 ~~~~~~~~~~~~~i~i~~~~~~e~--a~~l~~~l~~~~~~~~~~-i~~~ 289 (313) T 1mgp_A 244 KLREDTPEGSKLRVIGVHADNEAG--VVELLNTLRKSYEVVDEI-ISPM 289 (313) T ss_dssp HHHTTSCTTCEEEEEEEESSCHHH--HHHHHHHHTTTSEEEEEE-EEEC T ss_pred HHHHHHCCCCCEEEEEEECCCHHH--HHHHHHHHHHHCCCCCEE-EEEC T ss_conf 999863158971899994899999--999999998667998599-9980 No 3 >2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} SCOP: a.7.17.1 Probab=24.59 E-value=23 Score=15.84 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.2 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCCEEECCC Q ss_conf 89999999861826679999726400450498 Q 537021.9.peg.4 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95 (165) Q Consensus 64 f~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G 95 (165) -..+|+++++-+-.--+-.-.+.|+||||.-. T Consensus 29 AQ~~V~~F~rT~TVs~HRKAQrAVNLi~F~~~ 60 (80) T 2noj_B 29 AQKAVELFKRTRTVATHRKAQRAVNLIHFQHS 60 (80) T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999875479988999987768878989 No 4 >2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Probab=17.19 E-value=47 Score=14.00 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=6.4 Q ss_pred HHHHHHHHCCCCEE Q ss_conf 99999986799778 Q 537021.9.peg.4 143 DIKAVRTIFPTAQV 156 (165) Q Consensus 143 ~V~avl~~FPgAeI 156 (165) .|++.|.++||+|| T Consensus 21 ~V~~~l~~~~g~EI 34 (95) T 2jsx_A 21 DISTQLNAFPGCEV 34 (95) T ss_dssp HHHHHHTTSTTEEE T ss_pred HHHHHHHCCCCCEE T ss_conf 99999975999789 No 5 >2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A {Mycobacterium tuberculosis} Probab=17.01 E-value=53 Score=13.69 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.8 Q ss_pred HHHHHHHHCCCCEEEEEEECC Q ss_conf 999999867997789877458 Q 537021.9.peg.4 143 DIKAVRTIFPTAQVVCIRTIP 163 (165) Q Consensus 143 ~V~avl~~FPgAeI~~VR~~p 163 (165) .+..++.+||+|+++-+..-| T Consensus 238 ~l~~l~~~fPdAk~I~i~RdP 258 (384) T 2zq5_A 238 ALDALMATYPDALVVQTHRPV 258 (384) T ss_dssp CHHHHHHHCTTCEEEEEECCG T ss_pred HHHHHHHHCCCCEEEEEECCH T ss_conf 999999848987799852788 No 6 >3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2 Probab=15.88 E-value=57 Score=13.53 Aligned_cols=46 Identities=9% Similarity=-0.004 Sum_probs=21.8 Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEE Q ss_conf 9999998609925999968974136653969999998679977898774 Q 537021.9.peg.4 113 LATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRT 161 (165) Q Consensus 113 Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~ 161 (165) +-..+.+-.|..+.-.-. .......++..++.|..=+|+-+.-++. T Consensus 88 l~~~~~~~~g~~~~~~~~---~i~a~~~~~~~a~~L~i~~g~pvl~i~r 133 (162) T 3cnv_A 88 LYGLFESEFGVSMVRADE---KLRAVAASPEIAPLLGVEPGRPLLQVDR 133 (162) T ss_dssp HHHHHHHHHCCCEEEEEE---EEEEEECCTTTHHHHTCCTTCEEEEEEE T ss_pred HHHHHHHHCCCCCEEEEE---EEEEEECCHHHHHHCCCCCCCEEEEEEE T ss_conf 245899870997504689---9999979989998769699985999999 No 7 >3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} Probab=13.92 E-value=64 Score=13.21 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=60.6 Q ss_pred CCHHHHHHHHHHCCHH--------HHHHHHHHC---------------CCCE-EE-CCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 4489999999861826--------679999726---------------4004-50-498089997789997799999999 Q 537021.9.peg.4 62 NYTKQLIELCEKNHDY--------KMVEMLQRF---------------LHVV-SF-ELGRLEVSFLKEIPEDFIENLATK 116 (165) Q Consensus 62 nsf~~lveL~~~~rei--------~Lk~~Le~~---------------VrLV-sF-e~GrIei~~~~~a~~~l~~~Ls~~ 116 (165) .+|+++++.++..++- -|. +|.+. ++|| .| +.|+++.--.....+.....+... T Consensus 137 ~s~eeI~~~l~~~~~~~~~~f~v~~L~-~L~kgGRis~~~~~ig~lL~IkPIl~~~~~G~l~~~~kvRg~kka~~~l~~~ 215 (278) T 3fdj_A 137 KKFEEIDGAIDAYMQKTRLFCSLKSLH-NLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQAL 215 (278) T ss_dssp CCHHHHHHHHHHHHTTEEEEEEESCCH-HHHHTTSSCHHHHHGGGSTTEEEEEEECTTSSEEEEEEEESHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCEEEEEECCHH-HHHHCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 899999999999986367999969768-8966893417899999744763689997898398830147688999999999 Q ss_pred HHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC Q ss_conf 9986099259999689741366539699999986799778987745 Q 537021.9.peg.4 117 LKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162 (165) Q Consensus 117 L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~ 162 (165) +.+.....=.|.++-+..- .+++-+...+.+.||.++|. |.++ T Consensus 216 ~~~~~~~~~~v~i~h~~~~--e~a~~l~~~l~~~~~~~~i~-i~~~ 258 (278) T 3fdj_A 216 LDDAGYEGGKLRICHVENE--ALADKIADMIKQAYGTTDVC-VYKA 258 (278) T ss_dssp HHHHTCCSCCEEEEESSCH--HHHHHHHHHHHHHHCCCCEE-EEEC T ss_pred HHHHCCCCCEEEEEECCCH--HHHHHHHHHHHHHCCCCCEE-EEEC T ss_conf 9973889986999979999--99999999999676998599-9982 No 8 >1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A Probab=12.58 E-value=70 Score=12.98 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=34.3 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHC-CHHHHHHHHHCCCCEEEE Q ss_conf 999999998609925999968974136653-969999998679977898 Q 537021.9.peg.4 111 ENLATKLKNWTGEDWEIRFSLGRCCEYFEI-DSDIKAVRTIFPTAQVVC 158 (165) Q Consensus 111 ~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~-dp~V~avl~~FPgAeI~~ 158 (165) +.|++.+...||+.=++-+..|-+.-+.+- -..|..+...+|+|+|+. T Consensus 147 ~~Lg~~v~~~~g~~~~~~~w~G~C~VH~~f~~~~i~~~r~~~P~a~Vlv 195 (300) T 1wzu_A 147 KNLAHYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMI 195 (300) T ss_dssp HHHHHHHHHHHCCEEEEC-----------CCHHHHHHHHHHCTTCEEEE T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHCCCCEEEE T ss_conf 6788999986587614420588652888457999999998689965996 No 9 >3db7_A Putative calcium-regulated periplasmic protein; NP_809836.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} PDB: 3due_A* Probab=12.30 E-value=72 Score=12.93 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=16.3 Q ss_pred HHHHHHHHHCCCCEEEEEEEC Q ss_conf 699999986799778987745 Q 537021.9.peg.4 142 SDIKAVRTIFPTAQVVCIRTI 162 (165) Q Consensus 142 p~V~avl~~FPgAeI~~VR~~ 162 (165) +...+|...||+++|.+|... T Consensus 80 ~V~~~i~~~yp~~~I~~ie~~ 100 (127) T 3db7_A 80 AIQKYVTTNYPDAKVLKIERD 100 (127) T ss_dssp HHHHHHHHHCTTCCEEEEEEC T ss_pred HHHHHHHHHCCCCEEEEEEEC T ss_conf 999999977899849999964 No 10 >2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesion/toxin complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C Probab=12.28 E-value=72 Score=12.92 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=24.9 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECC Q ss_conf 999999986182667999972640045049 Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94 (165) Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~ 94 (165) ..+|..+++-+-.--+-.-.+.|+||+|+- T Consensus 11 Q~~V~~F~~T~TVs~HRKAQ~AVNLi~F~~ 40 (61) T 2gom_A 11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY 40 (61) T ss_dssp HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987457998899998765777898 Done!