Query 537021.9.peg.473_1
Match_columns 165
No_of_seqs 132 out of 531
Neff 4.7
Searched_HMMs 23785
Date Wed May 25 00:15:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aya_A DNA polymerase III subu 61.5 8.8 0.00037 18.3 4.6 67 66-133 25-95 (128)
2 1mgp_A Hypothetical protein TM 28.4 31 0.0013 15.1 3.9 97 62-162 165-289 (313)
3 2noj_B EFB homologous protein; 24.6 23 0.00096 15.8 1.3 32 64-95 29-60 (80)
4 2jsx_A Protein NAPD; TAT, proo 17.2 47 0.002 14.0 1.6 14 143-156 21-34 (95)
5 2zq5_A Putative uncharacterize 17.0 53 0.0022 13.7 3.0 21 143-163 238-258 (384)
6 3cnv_A Putative GNTR-family tr 15.9 57 0.0024 13.5 2.0 46 113-161 88-133 (162)
7 3fdj_A DEGV family protein; GU 13.9 64 0.0027 13.2 5.3 97 62-162 137-258 (278)
8 1wzu_A Quinolinate synthetase 12.6 70 0.003 13.0 4.3 48 111-158 147-195 (300)
9 3db7_A Putative calcium-regula 12.3 72 0.003 12.9 3.1 21 142-162 80-100 (127)
10 2gom_A Fibrinogen-binding prot 12.3 72 0.003 12.9 2.0 30 65-94 11-40 (61)
No 1
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=61.50 E-value=8.8 Score=18.27 Aligned_cols=67 Identities=12% Similarity=-0.026 Sum_probs=48.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCC----CCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 999999861826679999726400450498089997789----99779999999999860992599996897
Q 537021.9.peg.4 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE----IPEDFIENLATKLKNWTGEDWEIRFSLGR 133 (165)
Q Consensus 66 ~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~----a~~~l~~~Ls~~L~~wTG~rW~VslS~g~ 133 (165)
+=..++..-.=-.+..+|=.+.-+.++ .+.+.+.+.+. .+.....+|+..|.++-|+...|.+..|.
T Consensus 25 ~W~~lv~~L~L~G~~~qLA~n~~l~~~-~~~~~L~l~~~~~~L~~~~~~~~L~~aLs~~~g~~i~l~I~~g~ 95 (128)
T 2aya_A 25 PWAAQVSQLSLPKLVEQVALNAWKEES-DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 95 (128)
T ss_dssp HHHHHHHHHTCCSHHHHHHHTEEEEEC-SSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEECC
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 079999986982899999984376400-88589998877665568999999999999997898478998788
No 2
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=28.39 E-value=31 Score=15.07 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHC---CHHH-------HHHHHHHCCC----------------CEEECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 4489999999861---8266-------7999972640----------------045049808999778999779999999
Q 537021.9.peg.4 62 NYTKQLIELCEKN---HDYK-------MVEMLQRFLH----------------VVSFELGRLEVSFLKEIPEDFIENLAT 115 (165)
Q Consensus 62 nsf~~lveL~~~~---rei~-------Lk~~Le~~Vr----------------LVsFe~GrIei~~~~~a~~~l~~~Ls~ 115 (165)
.+|+++++.+++. .++. |.| |.+.-| +++|+.|.++..-.-..-+.-...+-.
T Consensus 165 ~s~eeI~~~l~~~~~~~~~~~~f~v~~L~~-L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~~~K~Rg~kka~~~l~~ 243 (313)
T 1mgp_A 165 ATIEEVLKKLDERMKNKDFKAIFYVSNFDY-LVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIE 243 (313)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCTHH-HHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCEEEEEEEECCHHH-HHHCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEEECHHHHHHHHHH
T ss_conf 999999999999874370699999588999-9868950689999986107269999709748997554008899999999
Q ss_pred HHHHHCCCCEE--EEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 99986099259--999689741366539699999986799778987745
Q 537021.9.peg.4 116 KLKNWTGEDWE--IRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162 (165)
Q Consensus 116 ~L~~wTG~rW~--VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~ 162 (165)
.+.+..+.... |.++.+...+. ++.+.+.+.+.||+.++. +.++
T Consensus 244 ~~~~~~~~~~~~~i~i~~~~~~e~--a~~l~~~l~~~~~~~~~~-i~~~ 289 (313)
T 1mgp_A 244 KLREDTPEGSKLRVIGVHADNEAG--VVELLNTLRKSYEVVDEI-ISPM 289 (313)
T ss_dssp HHHTTSCTTCEEEEEEEESSCHHH--HHHHHHHHTTTSEEEEEE-EEEC
T ss_pred HHHHHHCCCCCEEEEEEECCCHHH--HHHHHHHHHHHCCCCCEE-EEEC
T ss_conf 999863158971899994899999--999999998667998599-9980
No 3
>2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} SCOP: a.7.17.1
Probab=24.59 E-value=23 Score=15.84 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 89999999861826679999726400450498
Q 537021.9.peg.4 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95 (165)
Q Consensus 64 f~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G 95 (165)
-..+|+++++-+-.--+-.-.+.|+||||.-.
T Consensus 29 AQ~~V~~F~rT~TVs~HRKAQrAVNLi~F~~~ 60 (80)
T 2noj_B 29 AQKAVELFKRTRTVATHRKAQRAVNLIHFQHS 60 (80)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999875479988999987768878989
No 4
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=17.19 E-value=47 Score=14.00 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=6.4
Q ss_pred HHHHHHHHCCCCEE
Q ss_conf 99999986799778
Q 537021.9.peg.4 143 DIKAVRTIFPTAQV 156 (165)
Q Consensus 143 ~V~avl~~FPgAeI 156 (165)
.|++.|.++||+||
T Consensus 21 ~V~~~l~~~~g~EI 34 (95)
T 2jsx_A 21 DISTQLNAFPGCEV 34 (95)
T ss_dssp HHHHHHTTSTTEEE
T ss_pred HHHHHHHCCCCCEE
T ss_conf 99999975999789
No 5
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A {Mycobacterium tuberculosis}
Probab=17.01 E-value=53 Score=13.69 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCCEEEEEEECC
Q ss_conf 999999867997789877458
Q 537021.9.peg.4 143 DIKAVRTIFPTAQVVCIRTIP 163 (165)
Q Consensus 143 ~V~avl~~FPgAeI~~VR~~p 163 (165)
.+..++.+||+|+++-+..-|
T Consensus 238 ~l~~l~~~fPdAk~I~i~RdP 258 (384)
T 2zq5_A 238 ALDALMATYPDALVVQTHRPV 258 (384)
T ss_dssp CHHHHHHHCTTCEEEEEECCG
T ss_pred HHHHHHHHCCCCEEEEEECCH
T ss_conf 999999848987799852788
No 6
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=15.88 E-value=57 Score=13.53 Aligned_cols=46 Identities=9% Similarity=-0.004 Sum_probs=21.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999998609925999968974136653969999998679977898774
Q 537021.9.peg.4 113 LATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRT 161 (165)
Q Consensus 113 Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~ 161 (165)
+-..+.+-.|..+.-.-. .......++..++.|..=+|+-+.-++.
T Consensus 88 l~~~~~~~~g~~~~~~~~---~i~a~~~~~~~a~~L~i~~g~pvl~i~r 133 (162)
T 3cnv_A 88 LYGLFESEFGVSMVRADE---KLRAVAASPEIAPLLGVEPGRPLLQVDR 133 (162)
T ss_dssp HHHHHHHHHCCCEEEEEE---EEEEEECCTTTHHHHTCCTTCEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEE---EEEEEECCHHHHHHCCCCCCCEEEEEEE
T ss_conf 245899870997504689---9999979989998769699985999999
No 7
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens}
Probab=13.92 E-value=64 Score=13.21 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHCCHH--------HHHHHHHHC---------------CCCE-EE-CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 4489999999861826--------679999726---------------4004-50-498089997789997799999999
Q 537021.9.peg.4 62 NYTKQLIELCEKNHDY--------KMVEMLQRF---------------LHVV-SF-ELGRLEVSFLKEIPEDFIENLATK 116 (165)
Q Consensus 62 nsf~~lveL~~~~rei--------~Lk~~Le~~---------------VrLV-sF-e~GrIei~~~~~a~~~l~~~Ls~~ 116 (165)
.+|+++++.++..++- -|. +|.+. ++|| .| +.|+++.--.....+.....+...
T Consensus 137 ~s~eeI~~~l~~~~~~~~~~f~v~~L~-~L~kgGRis~~~~~ig~lL~IkPIl~~~~~G~l~~~~kvRg~kka~~~l~~~ 215 (278)
T 3fdj_A 137 KKFEEIDGAIDAYMQKTRLFCSLKSLH-NLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQAL 215 (278)
T ss_dssp CCHHHHHHHHHHHHTTEEEEEEESCCH-HHHHTTSSCHHHHHGGGSTTEEEEEEECTTSSEEEEEEEESHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCEEEEEECCHH-HHHHCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 899999999999986367999969768-8966893417899999744763689997898398830147688999999999
Q ss_pred HHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 9986099259999689741366539699999986799778987745
Q 537021.9.peg.4 117 LKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162 (165)
Q Consensus 117 L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~ 162 (165)
+.+.....=.|.++-+..- .+++-+...+.+.||.++|. |.++
T Consensus 216 ~~~~~~~~~~v~i~h~~~~--e~a~~l~~~l~~~~~~~~i~-i~~~ 258 (278)
T 3fdj_A 216 LDDAGYEGGKLRICHVENE--ALADKIADMIKQAYGTTDVC-VYKA 258 (278)
T ss_dssp HHHHTCCSCCEEEEESSCH--HHHHHHHHHHHHHHCCCCEE-EEEC
T ss_pred HHHHCCCCCEEEEEECCCH--HHHHHHHHHHHHHCCCCCEE-EEEC
T ss_conf 9973889986999979999--99999999999676998599-9982
No 8
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=12.58 E-value=70 Score=12.98 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHC-CHHHHHHHHHCCCCEEEE
Q ss_conf 999999998609925999968974136653-969999998679977898
Q 537021.9.peg.4 111 ENLATKLKNWTGEDWEIRFSLGRCCEYFEI-DSDIKAVRTIFPTAQVVC 158 (165)
Q Consensus 111 ~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~-dp~V~avl~~FPgAeI~~ 158 (165)
+.|++.+...||+.=++-+..|-+.-+.+- -..|..+...+|+|+|+.
T Consensus 147 ~~Lg~~v~~~~g~~~~~~~w~G~C~VH~~f~~~~i~~~r~~~P~a~Vlv 195 (300)
T 1wzu_A 147 KNLAHYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMI 195 (300)
T ss_dssp HHHHHHHHHHHCCEEEEC-----------CCHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf 6788999986587614420588652888457999999998689965996
No 9
>3db7_A Putative calcium-regulated periplasmic protein; NP_809836.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} PDB: 3due_A*
Probab=12.30 E-value=72 Score=12.93 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCCEEEEEEEC
Q ss_conf 699999986799778987745
Q 537021.9.peg.4 142 SDIKAVRTIFPTAQVVCIRTI 162 (165)
Q Consensus 142 p~V~avl~~FPgAeI~~VR~~ 162 (165)
+...+|...||+++|.+|...
T Consensus 80 ~V~~~i~~~yp~~~I~~ie~~ 100 (127)
T 3db7_A 80 AIQKYVTTNYPDAKVLKIERD 100 (127)
T ss_dssp HHHHHHHHHCTTCCEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEEEEC
T ss_conf 999999977899849999964
No 10
>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesion/toxin complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C
Probab=12.28 E-value=72 Score=12.92 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 999999986182667999972640045049
Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94 (165)
Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~ 94 (165)
..+|..+++-+-.--+-.-.+.|+||+|+-
T Consensus 11 Q~~V~~F~~T~TVs~HRKAQ~AVNLi~F~~ 40 (61)
T 2gom_A 11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY 40 (61)
T ss_dssp HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987457998899998765777898
Done!