Query 537021.9.peg.473_1
Match_columns 165
No_of_seqs 132 out of 531
Neff 4.7
Searched_HMMs 13730
Date Wed May 25 00:50:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nojb1 a.7.17.1 (B:52-109) Un 28.0 15 0.0011 15.5 2.1 31 65-95 8-38 (58)
2 d2goma1 a.7.17.1 (A:105-165) F 20.7 24 0.0018 14.3 2.0 30 65-94 11-40 (61)
3 d1zata2 d.335.1.1 (A:217-338) 15.7 23 0.0017 14.4 1.0 68 90-159 35-109 (122)
4 d3cnva1 d.190.1.2 (A:98-259) P 13.9 37 0.0027 13.2 2.0 71 89-162 60-134 (162)
5 d1wzua1 c.145.1.1 (A:1-298) Qu 13.0 39 0.0029 13.1 4.3 48 111-158 147-195 (298)
6 d2noha2 d.129.1.2 (A:12-135) 8 12.9 40 0.0029 13.0 1.7 19 139-157 104-122 (124)
7 d1mgpa_ c.119.1.1 (A:) Hypothe 11.0 46 0.0033 12.7 3.1 94 62-157 141-261 (285)
8 d1neea1 d.241.1.1 (A:1-98) Tra 10.3 48 0.0035 12.5 5.1 58 60-118 40-97 (98)
9 d1ycya1 b.38.1.4 (A:5-70) Hypo 9.9 50 0.0036 12.4 2.7 20 113-132 3-22 (66)
10 d1chma1 c.55.2.1 (A:2-156) Cre 9.7 51 0.0037 12.4 2.6 20 142-161 130-149 (155)
No 1
>d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155 {Staphylococcus aureus [TaxId: 1280]}
Probab=28.03 E-value=15 Score=15.53 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 9999999861826679999726400450498
Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95 (165)
Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G 95 (165)
..+|+++++-+-.--+-.-.+.|+||||+-.
T Consensus 8 q~~v~~f~kt~tvs~hrkaqkavnlv~f~~~ 38 (58)
T d2nojb1 8 QKAVELFKRTRTVATHRKAQRAVNLIHFQHS 38 (58)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999874378988999987657667879
No 2
>d2goma1 a.7.17.1 (A:105-165) Fibrinogen-binding protein Efb (Fib) {Staphylococcus aureus [TaxId: 1280]}
Probab=20.68 E-value=24 Score=14.30 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 999999986182667999972640045049
Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94 (165)
Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~ 94 (165)
..+|.++++-+-.--+-.-.+.|+||+|+-
T Consensus 11 Q~~V~~F~~T~TVs~HRKAQ~AVNLi~F~~ 40 (61)
T d2goma1 11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY 40 (61)
T ss_dssp HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987667998899998765777898
No 3
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=15.67 E-value=23 Score=14.40 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=44.3
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE-------EEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEE
Q ss_conf 450498089997789997799999999998609925-------9999689741366539699999986799778987
Q 537021.9.peg.4 90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW-------EIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCI 159 (165)
Q Consensus 90 VsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wTG~rW-------~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~V 159 (165)
++|..| .+.+.+.+=++++.+|+.+....-..|. .|++++|-=.=.|..+..++++++++-.-+-++.
T Consensus 35 l~~dd~--~v~~d~~~v~~yV~~La~ky~T~gk~r~F~t~~G~titV~gG~YGW~Id~~~e~~~L~~~i~~G~~v~r 109 (122)
T d1zata2 35 LTYNDG--KVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTR 109 (122)
T ss_dssp EEEETT--EEEECHHHHHHHHHHHHHHHCTTTSCEEEECSSSSEEEECCCSSCEEECHHHHHHHHHHHHHHTSCEEE
T ss_pred EEECCC--CEEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCEEECHHHHHHHHHHHHHCCCCEEE
T ss_conf 897699--188889999999999998607789846889289999999189763588679999999999985995575
No 4
>d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator BB3683 {Bordetella bronchiseptica [TaxId: 518]}
Probab=13.90 E-value=37 Score=13.21 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=34.2
Q ss_pred CEEECCCEEEEEECCCCCHHHHH----HHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 04504980899977899977999----999999986099259999689741366539699999986799778987745
Q 537021.9.peg.4 89 VVSFELGRLEVSFLKEIPEDFIE----NLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162 (165)
Q Consensus 89 LVsFe~GrIei~~~~~a~~~l~~----~Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~ 162 (165)
++.++.-.|-....++.+..... .+-..|..-.|.+..=.- .......+++..++.|..-||+-+..|+..
T Consensus 60 P~~~~~~ylp~~~~~~~~~~~~~~~~~sl~~~l~~~~g~~~~~~~---~~i~a~~a~~~~a~~L~~~~~~p~l~i~r~ 134 (162)
T d3cnva1 60 PTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRAD---EKLRAVAASPEIAPLLGVEPGRPLLQVDRI 134 (162)
T ss_dssp EEEEEEEEEEGGGCTTCCHHHHHHCCCCHHHHHHHHHCCCEEEEE---EEEEEEECCTTTHHHHTCCTTCEEEEEEEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEHHHCCEEEEEEE---EEEEEECCCHHHHHHCCCCCCCEEEEEEEE
T ss_conf 499999971588860335666522688515777344791425668---999987699999975596999849999999
No 5
>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.05 E-value=39 Score=13.06 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHC-CHHHHHHHHHCCCCEEEE
Q ss_conf 999999998609925999968974136653-969999998679977898
Q 537021.9.peg.4 111 ENLATKLKNWTGEDWEIRFSLGRCCEYFEI-DSDIKAVRTIFPTAQVVC 158 (165)
Q Consensus 111 ~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~-dp~V~avl~~FPgAeI~~ 158 (165)
+.|++.+...||++=++-...|.+.-+.+- -..|..+...+|+|+|+.
T Consensus 147 ~~Lg~~~~~~~g~~~~~~~w~G~C~VH~~f~~~~i~~~r~~~P~a~vlv 195 (298)
T d1wzua1 147 KNLAHYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMI 195 (298)
T ss_dssp HHHHHHHHHHHCCEEEEC-----------CCHHHHHHHHHHCTTCEEEE
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCHHHEECHHHHHHHHHHCCCCEEEE
T ss_conf 0088888775223401100588662655366999999998599953996
No 6
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.86 E-value=40 Score=13.03 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.6
Q ss_pred HCCHHHHHHHHHCCCCEEE
Q ss_conf 5396999999867997789
Q 537021.9.peg.4 139 EIDSDIKAVRTIFPTAQVV 157 (165)
Q Consensus 139 ~~dp~V~avl~~FPgAeI~ 157 (165)
++||.++.+.+.|||..|.
T Consensus 104 ~~D~~~~~~~~~~~GiRIL 122 (124)
T d2noha2 104 SVDSHFQEVAQKFQGVRLL 122 (124)
T ss_dssp HHCHHHHHHHHHCTTCCCC
T ss_pred HCCHHHHHHHHCCCCEEEE
T ss_conf 4088999998719961772
No 7
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]}
Probab=10.99 E-value=46 Score=12.67 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHCCH---HH------HHHHHHHCCC----------------CEEECCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 448999999986182---66------7999972640----------------0450498089997789997799999999
Q 537021.9.peg.4 62 NYTKQLIELCEKNHD---YK------MVEMLQRFLH----------------VVSFELGRLEVSFLKEIPEDFIENLATK 116 (165)
Q Consensus 62 nsf~~lveL~~~~re---i~------Lk~~Le~~Vr----------------LVsFe~GrIei~~~~~a~~~l~~~Ls~~ 116 (165)
.+|+++++.++..++ +. =..+|.+.-| +++|+.|.++..-.....+.....|-..
T Consensus 141 ~s~~ei~~~l~~~~~~~~~~~~~~v~~L~~L~kgGRi~~~~a~ig~~L~ikPIl~~~~G~i~~~~k~R~~kka~~~l~~~ 220 (285)
T d1mgpa_ 141 ATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEK 220 (285)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHCCEEHHHHHHHHHHHCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 99999999999986437069999918889997589016889998876365477894398699987751188999999999
Q ss_pred HHHHCCC--CEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEE
Q ss_conf 9986099--2599996897413665396999999867997789
Q 537021.9.peg.4 117 LKNWTGE--DWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVV 157 (165)
Q Consensus 117 L~~wTG~--rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~ 157 (165)
+.++-+. .-.+.++.+.. ..+++-+.+.+...||..++.
T Consensus 221 ~~~~~~~~~~~~~~i~~~~~--~e~a~~l~~~l~~~~~~~~i~ 261 (285)
T d1mgpa_ 221 LREDTPEGSKLRVIGVHADN--EAGVVELLNTLRKSYEVVDEI 261 (285)
T ss_dssp HHTTSCTTCEEEEEEEESSC--HHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHHHHCCCCCEE
T ss_conf 99862158971999996989--999999999998567998699
No 8
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.28 E-value=48 Score=12.52 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 12448999999986182667999972640045049808999778999779999999999
Q 537021.9.peg.4 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLK 118 (165)
Q Consensus 60 ~~nsf~~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~a~~~l~~~Ls~~L~ 118 (165)
-+.+|.++..-....-+..++|-+..---..+++.|++-|. ....+.++-.-|.+++.
T Consensus 40 ii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~~~~lii~-G~~~~~~i~~~l~~yI~ 97 (98)
T d1neea1 40 FIQNFREVADALNRDPQHLLKFLLRELGTAGNLEGGRAILQ-GKFTHFLINERIEDYVN 97 (98)
T ss_dssp EESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBTTTEEEE-SSCSSSHHHHHHHHHHT
T ss_pred EEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCEEEEE-EEECHHHHHHHHHHHHC
T ss_conf 88526999988798989999999998587248748999999-66689999999999851
No 9
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.92 E-value=50 Score=12.45 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCCEEEEEECC
Q ss_conf 99999986099259999689
Q 537021.9.peg.4 113 LATKLKNWTGEDWEIRFSLG 132 (165)
Q Consensus 113 Ls~~L~~wTG~rW~VslS~g 132 (165)
|-+.|.+|-|+|=.|+++..
T Consensus 3 LdktL~~WKg~kvAv~vgse 22 (66)
T d1ycya1 3 LEKVLKEWKGHKVAVSVGGD 22 (66)
T ss_dssp HHHHHHHHTTSEEEEEEC--
T ss_pred HHHHHHHHCCCEEEEEECCC
T ss_conf 78799984795799996684
No 10
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=9.74 E-value=51 Score=12.40 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCCEEEEEEE
Q ss_conf 69999998679977898774
Q 537021.9.peg.4 142 SDIKAVRTIFPTAQVVCIRT 161 (165)
Q Consensus 142 p~V~avl~~FPgAeI~~VR~ 161 (165)
....++.+.||++++|++-.
T Consensus 130 ~~~~~L~~~lp~~~~vd~s~ 149 (155)
T d1chma1 130 QNRDKLAARYPDAELVDVAA 149 (155)
T ss_dssp HHHHHHHHHCTTCEEEECHH
T ss_pred HHHHHHHHHCCCCEEEEHHH
T ss_conf 99999997689998988089
Done!