RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.473_1
(165 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.0 bits (88), Expect = 0.001
Identities = 39/196 (19%), Positives = 59/196 (30%), Gaps = 80/196 (40%)
Query: 17 NVSSFAI--GENALPRNISSDECF-----------PLAEAGITEKQDVLNRLSACTPDN- 62
N AI G+ N D+ F L I + L+ L T +
Sbjct: 153 NAQLVAIFGGQG----NT--DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-TTLDA 205
Query: 63 ---YTKQL-----IELCEK--NHDY--------KMVEMLQRFLH-VVSFELGRLEVSFLK 103
+T+ L +E + DY ++ ++Q H VV+ +L L +
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKL--LGFT--- 259
Query: 104 EIPEDFIENL-ATKLKNWTG--------------EDWEIRFSLGRCCEYFEIDSDIKAVR 148
P + L TG + WE S F S KA+
Sbjct: 260 --PGELRSYLKGA-----TGHSQGLVTAVAIAETDSWE---S-------FF-VSVRKAIT 301
Query: 149 TIFPTAQVVCIRTIPN 164
+F V C PN
Sbjct: 302 VLFFIG-VRCYEAYPN 316
Score = 36.5 bits (84), Expect = 0.003
Identities = 26/148 (17%), Positives = 41/148 (27%), Gaps = 41/148 (27%)
Query: 13 LDALNVSSFAI--G--ENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP----DNYT 64
+DA + + G E+ L + + F +A ++ L T D+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL--VPTAS-FFIAS---QLQEQFNKILPEPTEGFAADDEP 54
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL------GRLEV--SFLKEIPEDF-----IE 111
EL +FL VS + +V L E + I
Sbjct: 55 TTPAELV------------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 112 NLATKLKNWTGEDWEIRFSLGRCCEYFE 139
LA KL L + Y
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKN--YIT 128
Score = 26.4 bits (58), Expect = 3.1
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 44/173 (25%)
Query: 2 HAISWKKRKKK--LDALNVS--SFAIGENALPRNISSDECFP---------LAE-AGITE 47
H+ S+ R +K L A + + + E A ++ S P L E A +
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 48 KQDVLNRLSACTPDNY---TKQLI----ELCEKNHDYKMVEMLQRFLHVVSFELGRLEVS 100
DV++ S Y T Q+ EL N Y M+ + GR+ S
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN--YGMI----------AINPGRVAAS 1820
Query: 101 FLKEIPEDFIENLATKLKNWTGEDW--EI-RFSLGRCCEYFEIDSDIKAVRTI 150
F +E + +E + + TG W EI +++ + + D++A+ T+
Sbjct: 1821 FSQEALQYVVERVGKR----TG--WLVEIVNYNVEN--QQYVAAGDLRALDTV 1865
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 29.7 bits (66), Expect = 0.34
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 58 CTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKL 117
+P +++++ + +M + + L + + I E NL+ L
Sbjct: 718 FSPSAKLQEVLDYLTNSASLQMKSPAITA--TLEGKNRTLYLQSVTSIEERTRPNLSKTL 775
Query: 118 KNW 120
K
Sbjct: 776 KEL 778
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0
Length = 174
Score = 29.5 bits (66), Expect = 0.41
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLH 88
+L L E+ DY L+ F++
Sbjct: 100 SIYELAALAEEEKDYSTRAFLEWFIN 125
>3bvf_A Ferritin; iron storage, cytoplasm, metal-binding, oxidoreductase;
1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A
3bvl_A 3egm_A
Length = 181
Score = 29.1 bits (65), Expect = 0.51
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
+++ K+ D+ LQ ++
Sbjct: 116 NNIVDHAIKSKDHATFNFLQWYVA 139
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 28.1 bits (62), Expect = 0.88
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
+++++ + +M + + L + + I E NL+ LK
Sbjct: 354 QEVLDYLTNSASLQMKSPAITA--TLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein;
2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 28.0 bits (62), Expect = 1.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
L+E + DY LQ ++
Sbjct: 102 NTLVEHMLTHKDYSTFNFLQWYVS 125
>2wtl_A Bacterioferritin, BFR; metal binding protein, bacterioferritin A,
heme, iron, biliverdin, iron storage, metal-binding;
HET: UNL; 2.59A {Mycobacterium tuberculosis} PDB:
3bkn_A*
Length = 173
Score = 28.0 bits (62), Expect = 1.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
K I +C + D +L++ +
Sbjct: 106 KPGIVMCREKQDTTSAVLLEKIV 128
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 27.2 bits (60), Expect = 1.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 66 QLIELCEKNHDYKMVEMLQRFL 87
+ E+C+K DY ++ L
Sbjct: 124 ESREICDKLGDYVSKQLFDELL 145
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein;
HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Length = 161
Score = 27.3 bits (60), Expect = 1.8
Identities = 2/23 (8%), Positives = 9/23 (39%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
++ + C + D + + +
Sbjct: 102 REARDYCAEVGDIVSKNIFESLI 124
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (59), Expect = 2.0
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 25/115 (21%)
Query: 2 HAISWKKRKKKLDALNVSSFAIG---ENAL--PRNISSDECFPLAEAGITEKQDVLNRLS 56
H+ SW + L V IG L NI ++ + ++K+ N L
Sbjct: 655 HSESWANQ------LTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLG 708
Query: 57 ACTPDNYTKQLIELCEK-------NHDYKMVEMLQRFLHVVSFELGRLEVSFLKE 104
TP +++ELC+K N + V L+ F + EL +E S +++
Sbjct: 709 LLTP-----EVVELCQKSPVMADLNGGLQFVPELKEFTAKLRKEL--VETSEVRK 756
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 26.8 bits (59), Expect = 2.2
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
L E HD+ ++ L F
Sbjct: 103 LNLAEAASTCHDFAVMAFLNPFHL 126
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 26.8 bits (59), Expect = 2.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
+L N DY LQ ++
Sbjct: 102 NELAHAAMTNQDYPTFNFLQWYVS 125
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON
centre, HAEM Fe-coproporphyrin III cofactor; HET: FEC;
1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB:
1nf6_A* 1nf4_A*
Length = 179
Score = 26.6 bits (58), Expect = 3.0
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL-----HVVSFE 93
Q +++C++ D + +R + H+ +E
Sbjct: 107 SQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYE 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 16/37 (43%)
Query: 7 KKRKKKLDA-LNVSSFAIGENALPRNISSDECFP-LA 41
K+ KKL A L + +A D+ P LA
Sbjct: 19 KQALKKLQASLKL--YA------------DDSAPALA 41
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structure
initiative, PSI, joint center for structural genomics;
2.00A {Thermotoga maritima MSB8} SCOP: a.25.1.1 PDB:
1z4a_A*
Length = 176
Score = 26.1 bits (57), Expect = 4.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
++EL + D+ V L+ F+
Sbjct: 116 YNILELASEEKDHATVSFLKWFVD 139
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative
splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 25.3 bits (55), Expect = 6.7
Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
K +I + EK D++ + L LH ++ + S + + F ED
Sbjct: 112 KLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYF---RVAFFGQGFFED 168
Query: 125 WEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTIP 163
+ + + + + + + + ++ +
Sbjct: 169 EDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMI 207
>1x49_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 97
Score = 25.0 bits (54), Expect = 7.9
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 59 TPDNYTKQLIELCEKNH---DYKMVE 81
TP Y +L + + + YK +
Sbjct: 12 TPGFYMDKLNKYRQMHGVAITYKELS 37
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxidase activity,
heme, metal binding protein; HET: HEM; 2.80A
{Rhodobacter sphaeroides 2}
Length = 161
Score = 25.0 bits (54), Expect = 7.9
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
+ + CEK DY + + +
Sbjct: 102 IEARDHCEKVRDYPSKMLFEELI 124
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,460,521
Number of extensions: 63546
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 29
Length of query: 165
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 80
Effective length of database: 3,632,490
Effective search space: 290599200
Effective search space used: 290599200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)