HHsearch alignment for GI: peg_476 and conserved domain: TIGR00797
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.51 E-value=1.4e-10 Score=76.06 Aligned_cols=212 Identities=14% Similarity=0.074 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999995765679999999-9634999999986556677755899999985100799999999999999
Q 537021.9.peg.4 17 SVNRCLGFVRASLMAAVFGVGKITDAFYTV-AYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVL 95 (241)
Q Consensus 17 l~SrilGf~Re~~~A~~fGa~~~~DAf~~A-~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~ 95 (241)
T Consensus 6 ~~~q~~~~l~D~~~vG~lg~-~~Laav~~g~~~~~~~~~~~~~----gl~~a~~~~~aq~~Ga~~~~~~~~~~~~~~~la 80 (412)
T TIGR00797 6 NILQPLLGLVDTAFVGHLGP-VDLAAVGLGISSVFMLLISILL----GLGTATTALVAQAVGAGNRQRLGRQAQQSLLLA 80 (412)
T ss_pred HHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99998887986630023118-9999999999999999999999----999889999999883324899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987143321024763210246888999999999999989999999999999998689986777889999
Q 537021.9.peg.4 96 LPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHIL 175 (241)
Q Consensus 96 ~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~ 175 (241)
T Consensus 81 ~~lg~~~~~~~~~~~~~l~~-~~--~--~~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~~~~ 155 (412)
T TIGR00797 81 LLLGLPVLLVGLFFIDPLLS-LM--G--ADGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIGNLL 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HC--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999988888998-41--7--9888999899989999999999999999999974542258999999999999
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC--CCCCCCCHHHHHHC
Q ss_conf 9999999996-046557316899999999999999999999999973----98777--76889998998542
Q 537021.9.peg.4 176 PIFVLTYALC-YGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS----GVELR--FQYPRLTCNVKLFL 240 (241)
Q Consensus 176 ~I~~~~~~~~-~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~----g~~~~--~~~~~~~~~~k~~l 240 (241)
T Consensus 156 Ni~L~~~li~G~fG--~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 225 (412)
T TIGR00797 156 NIVLDYILIFGKFG--FPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLL 225 (412)
T ss_pred HHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99983898717888--71247776689999999999999999999712124321224443302589999999