HHsearch alignment for GI: peg_476 and conserved domain: TIGR01695

>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=362.20  Aligned_cols=236  Identities=26%  Similarity=0.492  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4    4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN   83 (241)
Q Consensus         4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~   83 (241)
T Consensus         1 sl~k~~~~v~~~TL~SRi~GfvR~~i~a~~fGag~~~DAF~vA~~~Pn~~RrlfaGiEGA~~~aFvP~f~~~~~~~g~~~   80 (538)
T TIGR01695         1 SLLKSTLIVSLGTLFSRILGFVRDAIIASAFGAGLVADAFNVAFKIPNLLRRLFAGIEGAFSSAFVPVFKKAKKKEGEKE   80 (538)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             92899999999999999999999999998836770799999999988999999852302477889999999996155578


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99-999999999999999999999987143321024763-210246-888999999999999989999999999999998
Q 537021.9.peg.4   84 AW-RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPG-FPYQSD-EYFLTVQLSRVVMPSIFFISLASLVTGILFASG  160 (241)
Q Consensus        84 a~-~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apG-f~~~~~-~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~  160 (241)
T Consensus        81 ~~~~f~~~~~~l~~~~~~l~~~~~~~~a~~~~-~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl~l~sL~~~~~~~Ln~~~  159 (538)
T TIGR01695        81 ARRAFAEKVLTLLILVLLLVVLLGIFFAPIVI-SLLAPGLFADDAANKFSLAVSLLRITFPYLLLISLAAVFGAILNARE  159 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999999999999788899-73176435740245899999999999999999999999999997755


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCC
Q ss_conf             68998677788999999999999960465573168-----999999999999999999999999739---8777768899
Q 537021.9.peg.4  161 RYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEM-----IYLLCWGVFLAHAVYFWILYLSAKKSG---VELRFQYPRL  232 (241)
Q Consensus       161 ~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~-----i~~la~g~~lg~~~q~l~~~~~l~k~g---~~~~~~~~~~  232 (241)
T Consensus       160 ~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l~~~G~R~~~~~prf~~~  239 (538)
T TIGR01695       160 RFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPALRKAGIRGLLLKPRFNFR  239 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf             55256799999999999999999863012466667899999999999999999999999999710673035531010335


Q ss_pred             CHHHHHHC
Q ss_conf             98998542
Q 537021.9.peg.4  233 TCNVKLFL  240 (241)
Q Consensus       233 ~~~~k~~l  240 (241)
T Consensus       240 ~~~l~~~l  247 (538)
T TIGR01695       240 DPGLKRFL  247 (538)
T ss_pred             CHHHHHHH
T ss_conf             45899999