HHsearch alignment for GI: peg_476 and conserved domain: TIGR01695
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=362.20 Aligned_cols=236 Identities=26% Similarity=0.492 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
T Consensus 1 sl~k~~~~v~~~TL~SRi~GfvR~~i~a~~fGag~~~DAF~vA~~~Pn~~RrlfaGiEGA~~~aFvP~f~~~~~~~g~~~ 80 (538)
T TIGR01695 1 SLLKSTLIVSLGTLFSRILGFVRDAIIASAFGAGLVADAFNVAFKIPNLLRRLFAGIEGAFSSAFVPVFKKAKKKEGEKE 80 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 92899999999999999999999999998836770799999999988999999852302477889999999996155578
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-999999999999999999999987143321024763-210246-888999999999999989999999999999998
Q 537021.9.peg.4 84 AW-RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPG-FPYQSD-EYFLTVQLSRVVMPSIFFISLASLVTGILFASG 160 (241)
Q Consensus 84 a~-~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apG-f~~~~~-~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~ 160 (241)
T Consensus 81 ~~~~f~~~~~~l~~~~~~l~~~~~~~~a~~~~-~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl~l~sL~~~~~~~Ln~~~ 159 (538)
T TIGR01695 81 ARRAFAEKVLTLLILVLLLVVLLGIFFAPIVI-SLLAPGLFADDAANKFSLAVSLLRITFPYLLLISLAAVFGAILNARE 159 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999788899-73176435740245899999999999999999999999999997755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCC
Q ss_conf 68998677788999999999999960465573168-----999999999999999999999999739---8777768899
Q 537021.9.peg.4 161 RYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEM-----IYLLCWGVFLAHAVYFWILYLSAKKSG---VELRFQYPRL 232 (241)
Q Consensus 161 ~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~-----i~~la~g~~lg~~~q~l~~~~~l~k~g---~~~~~~~~~~ 232 (241)
T Consensus 160 ~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l~~~G~R~~~~~prf~~~ 239 (538)
T TIGR01695 160 RFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPALRKAGIRGLLLKPRFNFR 239 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 55256799999999999999999863012466667899999999999999999999999999710673035531010335
Q ss_pred CHHHHHHC
Q ss_conf 98998542
Q 537021.9.peg.4 233 TCNVKLFL 240 (241)
Q Consensus 233 ~~~~k~~l 240 (241)
T Consensus 240 ~~~l~~~l 247 (538)
T TIGR01695 240 DPGLKRFL 247 (538)
T ss_pred CHHHHHHH
T ss_conf 45899999