HHsearch alignment for GI: peg_476 and conserved domain: pfam01943
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=99.34 E-value=1.5e-08 Score=64.86 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999999999576567999999996349999999865566777558999999851007999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENA 84 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a 84 (241)
T Consensus 1 llkn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG-~~~l~~~~~~~~~~~~~l---G~~~a~~r~~~~~~~~---~~~ 73 (272)
T pfam01943 1 LLKNALVLLLAQLISKLLPFVTLPYLARVLGPEGFG-LYSFALAIVGLFVIFADL---GLNAALVREIARYRDD---EKS 73 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCH---HHH
T ss_conf 906889999999999999999999999994999868-999999999999999987---3259999998752308---888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999871433210247632102468889999999999999899999999999999986899
Q 537021.9.peg.4 85 WRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~ 164 (241)
T Consensus 74 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (272)
T pfam01943 74 SKYI-----SNVLLGKLLLSLIFLLILLIAAFLGL------PD---LAVILLILALAILLLPGVSQFFSWLFQGLEKMKY 139 (272)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCC------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-----99999999999999999999999878------43---7999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 8677788999999999999960465573168999999999999999999999999739877776889998998542
Q 537021.9.peg.4 165 ACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 (241)
Q Consensus 165 ~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~~k~~l 240 (241)
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~l 207 (272)
T pfam01943 140 IAISMIIEKLGSLILVFIAVFLGL------DLLAAVLILLIASLIGGIIALAVLRKKFLPRFVF--FSLKLFKELL 207 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHH
T ss_conf 999999999999999999999715------6999999999999999999999999985356467--8899999999