HHsearch alignment for GI: peg_476 and conserved domain: pfam04506

>pfam04506 Rft-1 Rft protein.
Probab=90.26  E-value=1  Score=21.88  Aligned_cols=127  Identities=12%  Similarity=0.065  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999871433210247632102468889999999999999899999999999999986
Q 537021.9.peg.4   82 ENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGR  161 (241)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~  161 (241)
T Consensus       324 ~~a~~~L~~llk~~~~igL~i~~FGp~ys~~lL~ll~G~~ws~-~~----~~~lL~~Yc~YIp~LAiNGItEAF~~avat  398 (533)
T pfam04506       324 KDAVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLYGGSKWSE-NG----GASLLSWYCGYIPFLAINGITEGFAMASAT  398 (533)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999999817100899999967765657-87----789999999999999970099999999579


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---89986777889999999999999604655731689999999999999999999999997
Q 537021.9.peg.4  162 ---YFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKK  220 (241)
Q Consensus       162 ---F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k  220 (241)
T Consensus       399 ~~el~~~n~~M~~fS~~---fl~~sy~l~~~----lG~~GlI~AN~iNM~lRI~ys~~fI~~  453 (533)
T pfam04506       399 SRQIFKHGKFMFAFSVI---FLIISYVLCVY----LGSAGFILANIINMSLRILYNWRFIRH  453 (533)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999---99999999987----072289999998899999999999999