HHsearch alignment for GI: peg_476 and conserved domain: pfam04506
>pfam04506 Rft-1 Rft protein.
Probab=90.26 E-value=1 Score=21.88 Aligned_cols=127 Identities=12% Similarity=0.065 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999871433210247632102468889999999999999899999999999999986
Q 537021.9.peg.4 82 ENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGR 161 (241)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~ 161 (241)
T Consensus 324 ~~a~~~L~~llk~~~~igL~i~~FGp~ys~~lL~ll~G~~ws~-~~----~~~lL~~Yc~YIp~LAiNGItEAF~~avat 398 (533)
T pfam04506 324 KDAVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLYGGSKWSE-NG----GASLLSWYCGYIPFLAINGITEGFAMASAT 398 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999817100899999967765657-87----789999999999999970099999999579
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---89986777889999999999999604655731689999999999999999999999997
Q 537021.9.peg.4 162 ---YFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKK 220 (241)
Q Consensus 162 ---F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k 220 (241)
T Consensus 399 ~~el~~~n~~M~~fS~~---fl~~sy~l~~~----lG~~GlI~AN~iNM~lRI~ys~~fI~~ 453 (533)
T pfam04506 399 SRQIFKHGKFMFAFSVI---FLIISYVLCVY----LGSAGFILANIINMSLRILYNWRFIRH 453 (533)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999---99999999987----072289999998899999999999999