Query 537021.9.peg.476_1 Match_columns 241 No_of_seqs 114 out of 1668 Neff 7.3 Searched_HMMs 33803 Date Tue May 24 21:09:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_476.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2knc_A Integrin alpha-IIB; tr 39.0 20 0.00059 14.5 2.2 35 198-232 13-47 (54) 2 >3d31_C Sulfate/molybdate ABC 26.9 32 0.00096 13.3 14.9 71 103-174 168-247 (295) 3 >3g20_A Type II secretion prot 14.9 60 0.0018 11.8 1.2 28 62-89 1-28 (123) 4 >1va6_A Glutamate--cysteine li 14.2 51 0.0015 12.2 0.4 19 28-46 36-54 (169) 5 >3h4j_B AMPK kdaid, SNF1-like 8.4 70 0.0021 11.5 -0.5 33 14-46 14-48 (65) 6 >1gff_1 Bacteriophage G4 capsi 7.1 1.2E+02 0.0035 10.3 0.1 18 151-168 32-49 (72) 7 >2k1a_A Integrin alpha-IIB; si 7.0 1.2E+02 0.0035 10.2 4.9 29 198-226 11-39 (42) 8 >1v0d_A DNA fragmentation fact 5.2 1.6E+02 0.0049 9.4 1.1 29 65-93 126-154 (187) 9 >3ewt_E Tumor necrosis factor 5.1 1.7E+02 0.005 9.4 1.3 10 18-27 13-22 (26) 10 >2wgm_A ATP synthase subunit C 4.8 1.8E+02 0.0054 9.2 6.4 25 92-116 63-87 (89) No 1 >>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (A:) Probab=39.02 E-value=20 Score=14.46 Aligned_cols=35 Identities=23% Similarity=0.068 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 99999999999999999999997398777768899 Q 537021.9.peg.4 198 LLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRL 232 (241) Q Consensus 198 ~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~ 232 (241) +...+..+|+++-+......++|.|+.-|-+.+.. T Consensus 13 wiIi~s~i~GlllLali~~~L~K~GFFKR~~~~~~ 47 (54) T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPLE 47 (54) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 58899999999999999999998272015799876 No 2 >>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:) Probab=26.94 E-value=32 Score=13.30 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=42.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999987143321024763210246888999---------9999999999899999999999999986899867778899 Q 537021.9.peg.4 103 IMVIELVLPLLVRYVMAPGFPYQSDEYFLTV---------QLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIH 173 (241) Q Consensus 103 ~~l~~ifap~~v~~l~apGf~~~~~~~~la~---------~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~N 173 (241) ....+...|..+. ++..++..-+++++.+. .+.|+.+|...-.-+++...+..++-+.|..+.+-.--.+ T Consensus 168 ~~~~~~~~p~~~~-~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~ 246 (295) T 3d31_C 168 VAMLFVSMPYLAN-SAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPM 246 (295) T ss_dssp HHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCTTC T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999-999999750505899998769982621277469969999999999999999999999999958973 Q ss_pred H Q ss_conf 9 Q 537021.9.peg.4 174 I 174 (241) Q Consensus 174 i 174 (241) . T Consensus 247 ~ 247 (295) T 3d31_C 247 V 247 (295) T ss_dssp C T ss_pred H T ss_conf 1 No 3 >>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport, complex; HET: NHE; 1.78A {Escherichia coli O157} (A:) Probab=14.92 E-value=60 Score=11.83 Aligned_cols=28 Identities=7% Similarity=0.198 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 6677755899999985100799999999 Q 537021.9.peg.4 62 GVIHNSFIPMFSQRREQNGSENAWRLSS 89 (241) Q Consensus 62 Gal~~~fIP~~~~~~~~~~~~~a~~~~~ 89 (241) |.|.+..+|.|.++.+|-.+.++..-+. T Consensus 1 GILaaiA~P~y~~~~~kak~s~a~~~l~ 28 (123) T 3g20_A 1 GAMASLVVPNLMGNKDKADRQKVMSDLV 28 (123) T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEEHHHHCCCHHHHHHHHHHHHHH T ss_conf 9468766856514165899999999999 No 4 >>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} (A:157-242,A:338-362,A:403-460) Probab=14.18 E-value=51 Score=12.22 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=11.9 Q ss_pred HHHHHHHCCCHHHHHHHHH Q ss_conf 9999995765679999999 Q 537021.9.peg.4 28 SLMAAVFGVGKITDAFYTV 46 (241) Q Consensus 28 ~~~A~~fGa~~~~DAf~~A 46 (241) +++-|.||||+..|.=+.. T Consensus 36 WLL~YLfGASPa~~~SF~~ 54 (169) T 1va6_A 36 WVIPYLFGASPAISSSFLQ 54 (169) T ss_dssp THHHHHHCCBSEECGGGC- T ss_pred HHHHHHCCCCCCCCCCCCC T ss_conf 9999980588555301245 No 5 >>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase; 2.80A {Schizosaccharomyces pombe} (B:272-336) Probab=8.41 E-value=70 Score=11.46 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHH Q ss_conf 9999999999999999999957--65679999999 Q 537021.9.peg.4 14 ASESVNRCLGFVRASLMAAVFG--VGKITDAFYTV 46 (241) Q Consensus 14 ~~tl~SrilGf~Re~~~A~~fG--a~~~~DAf~~A 46 (241) +.+-+||-.|+-||=+.-+.=- .+.+-|||.+- T Consensus 14 vv~kLs~tMGY~rdeI~eAL~~~e~neIkDAY~li 48 (65) T 3h4j_B 14 IVSKLGEAMGFSEDYIVEALRSDENNEVKEAYNLL 48 (65) T ss_dssp HHHHHHHTTCCCHHHHHHHTTSSSCCSSTTHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 99999988299999999998676740999999999 No 6 >>1gff_1 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4} (1:92-163) Probab=7.12 E-value=1.2e+02 Score=10.25 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999868998677 Q 537021.9.peg.4 151 LVTGILFASGRYFIACMP 168 (241) Q Consensus 151 i~~~~L~a~~~F~~~a~~ 168 (241) +.+|+||.++.++-+-+. T Consensus 32 LhQ~YLNIYNNYFkaPWm 49 (72) T 1gff_1 32 LHQGYLNIYNNYFKPPWS 49 (72) T ss_dssp HHHHHHHHHHHHTSCTTS T ss_pred HHHHHHHHHHHHCCCCCC T ss_conf 788999988876056345 No 7 >>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A (A:) Probab=7.01 E-value=1.2e+02 Score=10.22 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999999999999997398777 Q 537021.9.peg.4 198 LLCWGVFLAHAVYFWILYLSAKKSGVELR 226 (241) Q Consensus 198 ~la~g~~lg~~~q~l~~~~~l~k~g~~~~ 226 (241) +......+++++........++|.|+.-| T Consensus 11 wiIi~s~i~GlL~Lali~~~L~K~GFFKR 39 (42) T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVGFFKR 39 (42) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCC T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 14799999999999999999998273247 No 8 >>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} (A:143-329) Probab=5.22 E-value=1.6e+02 Score=9.44 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 77558999999851007999999999999 Q 537021.9.peg.4 65 HNSFIPMFSQRREQNGSENAWRLSSEVFS 93 (241) Q Consensus 65 ~~~fIP~~~~~~~~~~~~~a~~~~~~~~~ 93 (241) +-+.+|.+.+..+++.+-+...|.+.+++ T Consensus 126 ~RtilP~l~~av~~gr~v~~eyFy~lLFT 154 (187) T 1v0d_A 126 KRTVVPTLAEAIQDGREVNWEYFYSLLFT 154 (187) T ss_dssp TTTHHHHHHHHHHHSSCBCHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHCCEECHHHHHHHHHH T ss_conf 01038999999974887019999999870 No 9 >>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens} (E:) Probab=5.13 E-value=1.7e+02 Score=9.39 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=6.4 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q 537021.9.peg.4 18 VNRCLGFVRA 27 (241) Q Consensus 18 ~SrilGf~Re 27 (241) +|++-||+|. T Consensus 13 lsqvkgfvrk 22 (26) T 3ewt_E 13 LSQVKGFVRK 22 (26) T ss_pred HHHHHHHHHH T ss_conf 9986447764 No 10 >>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A* (A:) Probab=4.83 E-value=1.8e+02 Score=9.20 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999871433210 Q 537021.9.peg.4 92 FSVLLPILMVMIMVIELVLPLLVRY 116 (241) Q Consensus 92 ~~~~~~~~~~i~~l~~ifap~~v~~ 116 (241) +.=...+..++..+..+|+.|++.. T Consensus 63 l~Ea~~i~~lvialillFanPf~~~ 87 (89) T 2wgm_A 63 VAESTGIYSLVIALILLYANPFVGL 87 (89) T ss_dssp HHHHHHHHHHHHHHHHHHSCSSTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999988477562 Done!