RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.476_1
         (241 letters)



>3b9w_A Ammonium transporter family; membrane protein, ammonia
           transport, rhesus protein, transport protein; HET: BOG;
           1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A*
           3b9z_A* (A:39-167,A:295-407)
          Length = 242

 Score = 26.4 bits (58), Expect = 3.4
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 1/51 (1%)

Query: 138 VVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHIL-PIFVLTYALCYG 187
            +     ++    LV          F     S+ IH     F L  ++   
Sbjct: 73  ALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALT 123


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.334    0.144    0.439 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,752,468
Number of extensions: 73788
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 15
Length of query: 241
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 155
Effective length of database: 2,048,819
Effective search space: 317566945
Effective search space used: 317566945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.1 bits)