RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.476_1
         (241 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 47/288 (16%), Positives = 67/288 (23%), Gaps = 148/288 (51%)

Query: 4   KLVRNFFTLVAS--------------ESVNRCLGFVRASLMAAVF-GVGKITDAF----- 43
           +L++N+ T                   +V    G   A L+A  F G G   D F     
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGE--G--NAQLVAI-FGGQGNTDDYFEELRD 175

Query: 44  -YTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVM 102
            Y   Y   +       GD       I                + S+E  S L       
Sbjct: 176 LYQT-YHVLV-------GD------LI----------------KFSAETLSEL------- 198

Query: 103 IMVIELVLPLLVRYVMAPGF------------PYQSDEYFLTVQLSRVVMPSIFFISLAS 150
                +   L    V   G             P    +Y L++ +S    P I  I LA 
Sbjct: 199 -----IRTTLDAEKVFTQGLNILEWLENPSNTP--DKDYLLSIPIS---CPLIGVIQLA- 247

Query: 151 LVTGILFASGRYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCW------GV- 203
                      Y +         +L                  E+   L        G+ 
Sbjct: 248 ----------HYVVTA------KLL-------------GFTPGELRSYLKGATGHSQGLV 278

Query: 204 -------------FLAHA-----VYFWILYLSAKKSGVELRFQYPRLT 233
                        F         V F+I        GV     YP  +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFI--------GVRCYEAYPNTS 318



 Score = 26.4 bits (58), Expect = 6.4
 Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 30/78 (38%)

Query: 39  ITDAFYTVAY----VEFIFVRLAARG---DGVIHNSF-IPMFSQR-----REQNGSENAW 85
           +   F++        + I   L       +        IP++        R    S +  
Sbjct: 423 VASPFHS-HLLVPASDLINKDLVKNNVSFNA---KDIQIPVYDTFDGSDLRVL--SGS-- 474

Query: 86  RLSSEVFSVLLPILMVMI 103
                    +   ++  I
Sbjct: 475 ---------ISERIVDCI 483


>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter)
           MATE-like MDR efflux...; multidrug transporter,
           cation-bound, transport protein; 3.65A {Vibrio cholerae}
           PDB: 3mku_A
          Length = 460

 Score = 30.1 bits (67), Expect = 0.48
 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 1/121 (0%)

Query: 97  PILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGIL 156
            +  +    I  +L +L R  +A  +        L +QL           ++  +  G L
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380

Query: 157 FASGRYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEM-IYLLCWGVFLAHAVYFWILY 215
                       + + + +      Y L   + + +  +       G  +  +    +L 
Sbjct: 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440

Query: 216 L 216
            
Sbjct: 441 Q 441


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 26.2 bits (57), Expect = 6.2
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 96  LPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGI 155
           LP L  M +++ +VL +     +   +          +  +   M  + F+ ++     +
Sbjct: 752 LPKLWGMSVLLGVVLAVGTWITVTTMYAQ---GENGGIVQNFGNMDEVLFLQISLTENWL 808

Query: 156 LFA--SGRYFIACMPS--MVIHILPIFVLTYALCY-------GSNMHKAEMIYLLCWGVF 204
           +F   +   F + +PS  +   I  + +L              +++     I++  +G+F
Sbjct: 809 IFITRANGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIF 868

Query: 205 LAHAVYFWILYLSAK 219
                 ++IL  S  
Sbjct: 869 CIMGGVYYILQDSVG 883


>1vkc_A Putative acetyl transferase; structural genomics, southeast
           collaboratory for structural genomics, secsg, protein
           structure initiative, PSI; 1.89A {Pyrococcus furiosus}
           SCOP: d.108.1.1
          Length = 158

 Score = 26.2 bits (57), Expect = 7.7
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 12  LVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGV 63
            VA    +  LG V          +   T  +  +AY+  I V   ARG G+
Sbjct: 64  FVALNERSELLGHVW-------ICITLDTVDYVKIAYIYDIEVVKWARGLGI 108


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.144    0.439 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,973,904
Number of extensions: 85509
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 25
Length of query: 241
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 151
Effective length of database: 3,511,270
Effective search space: 530201770
Effective search space used: 530201770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.5 bits)