HHsearch alignment for GI: peg_477 and conserved domain: COG0534
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
Probab=99.92 E-value=6.1e-22 Score=127.05 Aligned_cols=226 Identities=19% Similarity=0.188 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
T Consensus 75 g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~----~~~v~~~a~~Yl~i~~~~~~~~~ 150 (455)
T COG0534 75 GTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA----PAEVLELAAEYLRIILLGAPFAL 150 (455)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974998899999999999999999999999999969999998599----76799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-------
Q ss_conf 553445778776654334578899998886432455310----121023131027999999999999997113-------
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPF----IGGYGIATAEVSWVWVNTICLAVALLKRRQ------- 151 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~----~g~~G~a~at~is~~v~~~il~~~l~k~~~------- 151 (235)
T Consensus 151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNi~Ln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~ 230 (455)
T COG0534 151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230 (455)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999985899148799999999999999799999513121222099999999999999999999963430035542
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf --6666889999999999999999999999998643--------20221059999999999999999999-999999866
Q 537021.9.peg.4 152 --IDLPFQTIYRILSIFISSGLMGMFIVFFKPCLFN--------QLSAETAFSPFKNLAIILSGAVLVYL-CSISLLLGK 220 (235)
Q Consensus 152 --~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~y~-~~~~~~~~~ 220 (235)
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01479999999999966469999999999999999999975989999999999999999999999999999999998779
Q ss_pred HHHHHHHHHHCC
Q ss_conf 768999997305
Q 537021.9.peg.4 221 GFLASLKYSLKT 232 (235)
Q Consensus 221 ~~~~~l~~~~r~ 232 (235)
T Consensus 311 ~~~~~a~~~~~~ 322 (455)
T COG0534 311 GNYKRARRAARL 322 (455)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999999