HHsearch alignment for GI: peg_477 and conserved domain: COG2244
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].
Probab=99.86 E-value=1.8e-18 Score=109.82 Aligned_cols=140 Identities=21% Similarity=0.242 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
T Consensus 271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~------~~~~~~l~il~~~~~~~ 344 (480)
T COG2244 271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY------ASAAPILQLLALAGLFL 344 (480)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHH
T ss_conf 999999999876687678999999999999999999999999989999999828630------21699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6553445778776654334578899998886432455310121023131027999999999999997
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
T Consensus 345 ~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~~~~~~~~~~~~~~~ 410 (480)
T COG2244 345 SLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIAT-ASVIALALLLFYILRL 410 (480)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 99999999999836017999999999999999999999886699999999-9999999999999999