HHsearch alignment for GI: peg_477 and conserved domain: pfam01943
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=94.99 E-value=0.18 Score=25.35 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79988996297899999999999999999999999999988999999970789888998777778999999999996553
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSR 85 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~ 85 (235)
T Consensus 58 ~a~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~----~~~~~~~~~~~~~~~~ 125 (272)
T pfam01943 58 AALVREIARYRDDEKSSKY----ISNVLLGKLLLSLIFLLILLIAA-FLGL---PDLAVI----LLILALAILLLPGVSQ 125 (272)
T ss_pred HHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHCC---CHHHHH----HHHHHHHHHHHHHHHH
T ss_conf 9999998752308888999----99999999999999999999999-9878---437999----9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHH
Q ss_conf 44577877665433457889999888643245531-0121023131027999999999999997113---6666889999
Q 537021.9.peg.4 86 VLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP-FIGGYGIATAEVSWVWVNTICLAVALLKRRQ---IDLPFQTIYR 161 (235)
Q Consensus 86 il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~-~~g~~G~a~at~is~~v~~~il~~~l~k~~~---~~~~~~~~~~ 161 (235)
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (272)
T pfam01943 126 FFSWLFQGLEKMKYIAISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFVFFSLKLFKE 205 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999998999999999999999999999999715699999999999999999999999998535646788999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 537021.9.peg.4 162 ILSIFISSGL 171 (235)
Q Consensus 162 ~~k~~~as~i 171 (235)
T Consensus 206 ~l~~~~p~~~ 215 (272)
T pfam01943 206 LLRFSWPLFL 215 (272)
T ss_pred HHHHHHHHHH
T ss_conf 9988789999