Query 537021.9.peg.477_1
Match_columns 235
No_of_seqs 133 out of 1753
Neff 8.8
Searched_HMMs 13730
Date Wed May 25 00:24:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_477.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bh9a_ a.22.1.3 (A:) TAF(II)1 5.9 62 0.0046 10.4 0.3 13 46-58 3-15 (45)
2 d3bula1 a.46.1.1 (A:651-740) M 4.5 81 0.0059 9.8 4.5 66 5-73 10-77 (90)
3 d1iwga8 f.35.1.1 (A:513-566,A: 2.0 2.1E+02 0.015 7.7 14.7 37 195-232 185-221 (222)
4 d2p06a1 a.204.1.3 (A:1-84) Hyp 2.0 2.2E+02 0.016 7.7 4.8 26 8-33 51-76 (84)
5 d1v54g_ f.23.2.1 (G:) Mitochon 1.9 2.3E+02 0.017 7.5 2.6 17 29-45 18-34 (84)
6 d2fx0a2 a.121.1.1 (A:77-198) H 1.9 2.3E+02 0.017 7.5 1.2 22 2-23 81-102 (122)
7 d2vnud2 b.40.4.5 (D:911-998) E 1.7 1.9E+02 0.014 8.0 -0.7 11 117-127 18-28 (88)
8 d1rq2a1 c.32.1.1 (A:8-205) Cel 1.6 2.8E+02 0.02 7.1 1.7 20 6-25 65-84 (198)
9 d1w5fa1 c.32.1.1 (A:22-215) Ce 1.6 2.8E+02 0.02 7.1 1.1 20 6-25 64-83 (194)
10 d1p0za_ d.110.6.1 (A:) Sensor 1.6 2.8E+02 0.021 7.1 3.5 28 2-29 19-46 (131)
No 1
>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=62 Score=10.39 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999970789
Q 537021.9.peg.4 46 PKEIIQTLYERGA 58 (235)
Q Consensus 46 ~~piv~~lf~~G~ 58 (235)
..++-+++|+.|.
T Consensus 3 ~~ei~~mMy~~GD 15 (45)
T d1bh9a_ 3 SKELRCMMYGFGD 15 (45)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 7889999887189
No 2
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=4.48 E-value=81 Score=9.84 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 7799889962978999999999999999999999999--99988999999970789888998777778999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAI--LLMLPKEIIQTLYERGAFTAQDTILVSSYLSI 73 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~g--l~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~ 73 (235)
-=+++++..+||.+...+...+++.-.. =|..+. -.+=+-..+.-.|+.|++--..+.+.+.++..
T Consensus 10 ~ErL~~AII~G~~d~v~e~v~~al~~g~---~p~~Ii~~~Li~gm~~VG~~f~~ge~flP~vl~sA~aMk~ 77 (90)
T d3bula1 10 NKRLEYSLVKGITEFIEQDTEEARQQAT---RPCEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQ 77 (90)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHSS---STTHHHHTHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999982769879987998998602---1999999888879999999852787509999999999999
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.02 E-value=2.1e+02 Score=7.74 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999866768999997305
Q 537021.9.peg.4 195 PFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKT 232 (235)
Q Consensus 195 ~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~r~ 232 (235)
.+..++..+..|.+.-... .+..-...+..++++.+|
T Consensus 185 ~~~~la~~v~~Gll~s~~~-~l~~~Pal~~l~~r~~~r 221 (222)
T d1iwga8 185 AQNAVGTGVMGGMVTATVL-AIFFVPVFFVVVRRRFSR 221 (222)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTSSSSSSHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_conf 9979999999999999999-999999999999886458
No 4
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=1.95 E-value=2.2e+02 Score=7.66 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=13.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98899629789999999999999999
Q 537021.9.peg.4 8 LSSAIQLENKQQSSELRNRAIEYVLF 33 (235)
Q Consensus 8 lS~~~~~~~~~~~~~~l~~~l~~~~~ 33 (235)
+-+++.++|+++.++.+-+.-.+++.
T Consensus 51 lreavekedwenlrdelldvanfcmy 76 (84)
T d2p06a1 51 LREAVEKEDWENLRDELLDVANFCMY 76 (84)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999887798899999999999999
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.86 E-value=2.3e+02 Score=7.54 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998
Q 537021.9.peg.4 29 EYVLFFGIPCTAILLML 45 (235)
Q Consensus 29 ~~~~~i~iP~~~gl~~l 45 (235)
++++++.+|+.+...+.
T Consensus 18 kis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 18 FLTFGLALPSVALCTLN 34 (84)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88989999999999999
No 6
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=1.86 E-value=2.3e+02 Score=7.53 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 0267799889962978999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSEL 23 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~ 23 (235)
++++|++++....=+.++-.+.
T Consensus 81 ~vL~pk~k~f~~si~~~~~~dl 102 (122)
T d2fx0a2 81 IVLFPKFKKFIDSLGTNETNDT 102 (122)
T ss_dssp HHHCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9841647888732587887510
No 7
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=1.70 E-value=1.9e+02 Score=7.97 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=0.0
Q ss_pred HHHHHCCCCHH
Q ss_conf 55310121023
Q 537021.9.peg.4 117 GLFPFIGGYGI 127 (235)
Q Consensus 117 ~li~~~g~~G~ 127 (235)
.|+|.||.-|.
T Consensus 18 VfVPkyGiEG~ 28 (88)
T d2vnud2 18 VLVPKFGVEGL 28 (88)
T ss_dssp EEETTTTEEEE
T ss_pred EEEECCCEEEE
T ss_conf 99835650699
No 8
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=1.59 E-value=2.8e+02 Score=7.14 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCHHHHHHHHH
Q ss_conf 79988996297899999999
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRN 25 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~ 25 (235)
|.+.|..++++.++.++.++
T Consensus 65 p~~g~~aa~e~~~~I~~~l~ 84 (198)
T d1rq2a1 65 PEVGRKAAEDAKDEIEELLR 84 (198)
T ss_dssp HHHHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 55667668987999999846
No 9
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=1.59 E-value=2.8e+02 Score=7.14 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCHHHHHHHHH
Q ss_conf 79988996297899999999
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRN 25 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~ 25 (235)
|.+.|..++++.++.++.++
T Consensus 64 p~~g~~aa~e~~~~I~~~l~ 83 (194)
T d1w5fa1 64 PEIGEQAALESEEKIREVLQ 83 (194)
T ss_dssp HHHHHHHHHHTHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHC
T ss_conf 21667578888999999746
No 10
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=1.57 E-value=2.8e+02 Score=7.11 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 0267799889962978999999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIE 29 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~ 29 (235)
.|-.|.+.+++.++|.++.++.+++-.+
T Consensus 19 lA~~P~v~~al~~~d~~~l~~~~~~l~~ 46 (131)
T d1p0za_ 19 ISAMPELVEAVQKRDLARIKALIDPMRS 46 (131)
T ss_dssp HHTCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9679899998865899999999999999
Done!