RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.477_1 (235 letters) >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} (A:) Length = 131 Score = 27.2 bits (60), Expect = 2.2 Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 144 VALLKRRQIDLPFQTIYRILSIFISSGL 171 L+RR ++ T+YR L SSGL Sbjct: 33 HDELRRRGENIGLTTVYRTLQSMASSGL 60 >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* (A:1-88) Length = 88 Score = 27.1 bits (60), Expect = 2.3 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 144 VALLKRRQIDLPFQTIYRILSIFISSGL 171 L+ + ++ T+Y L +F SGL Sbjct: 44 YKALEGKFPNMSVATVYNNLRVFRESGL 71 >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} (A:17-85) Length = 69 Score = 25.8 bits (57), Expect = 4.6 Identities = 6/27 (22%), Positives = 12/27 (44%) Query: 145 ALLKRRQIDLPFQTIYRILSIFISSGL 171 +++ + T+YR L + GL Sbjct: 25 GEVRKTASGINISTVYRTLELLEELGL 51 >3i4r_B Nuclear pore complex protein NUP133; protein transport,structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens} (B:118-249) Length = 132 Score = 25.8 bits (57), Expect = 5.8 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 7 KLSSAIQLENKQQS-SELRNRAIEYVL 32 KLS+AI L+N S+L N AI L Sbjct: 17 KLSAAIVLKNHHSRLSDLVNTAILIAL 43 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} (A:1-85) Length = 85 Score = 25.5 bits (56), Expect = 7.1 Identities = 7/27 (25%), Positives = 14/27 (51%) Query: 145 ALLKRRQIDLPFQTIYRILSIFISSGL 171 L ++ T+YR+L+ F +G+ Sbjct: 41 KKLIDLGEEIGLATVYRVLNQFDDAGI 67 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.329 0.142 0.411 Gapped Lambda K H 0.267 0.0361 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,582,095 Number of extensions: 64256 Number of successful extensions: 226 Number of sequences better than 10.0: 1 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 13 Length of query: 235 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 149 Effective length of database: 2,048,819 Effective search space: 305274031 Effective search space used: 305274031 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 53 (25.2 bits)