RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.477_1
         (235 letters)



>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding,
           helix-turn-helix, zinc binding, gene regulation; 2.70A
           {Mycobacterium tuberculosis} (A:)
          Length = 131

 Score = 27.2 bits (60), Expect = 2.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 144 VALLKRRQIDLPFQTIYRILSIFISSGL 171
              L+RR  ++   T+YR L    SSGL
Sbjct: 33  HDELRRRGENIGLTTVYRTLQSMASSGL 60


>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA
           binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A
           2rgv_A* (A:1-88)
          Length = 88

 Score = 27.1 bits (60), Expect = 2.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 144 VALLKRRQIDLPFQTIYRILSIFISSGL 171
              L+ +  ++   T+Y  L +F  SGL
Sbjct: 44  YKALEGKFPNMSVATVYNNLRVFRESGL 71


>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake
           regulator, D-domain, dimerization domain, DB-domain,
           DNA-binding domain; 2.40A {Streptomyces coelicolor}
           (A:17-85)
          Length = 69

 Score = 25.8 bits (57), Expect = 4.6
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 145 ALLKRRQIDLPFQTIYRILSIFISSGL 171
             +++    +   T+YR L +    GL
Sbjct: 25  GEVRKTASGINISTVYRTLELLEELGL 51


>3i4r_B Nuclear pore complex protein NUP133; protein
          transport,structural protein, kinetochore, mRNA
          transport, nucleus, phosphoprotein, translocation;
          3.53A {Homo sapiens} (B:118-249)
          Length = 132

 Score = 25.8 bits (57), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 7  KLSSAIQLENKQQS-SELRNRAIEYVL 32
          KLS+AI L+N     S+L N AI   L
Sbjct: 17 KLSAAIVLKNHHSRLSDLVNTAILIAL 43


>2w57_A Ferric uptake regulation protein; gene regulation,
           transcription regulation, metal transport, zinc, iron,
           repressor, cytoplasm, DNA-binding; 2.60A {Vibrio
           cholerae} (A:1-85)
          Length = 85

 Score = 25.5 bits (56), Expect = 7.1
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 145 ALLKRRQIDLPFQTIYRILSIFISSGL 171
             L     ++   T+YR+L+ F  +G+
Sbjct: 41  KKLIDLGEEIGLATVYRVLNQFDDAGI 67


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.329    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0361    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,582,095
Number of extensions: 64256
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 13
Length of query: 235
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 149
Effective length of database: 2,048,819
Effective search space: 305274031
Effective search space used: 305274031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.2 bits)