RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.477_1 (235 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.8 bits (103), Expect = 3e-05 Identities = 52/264 (19%), Positives = 84/264 (31%), Gaps = 88/264 (33%) Query: 23 LRNRAIEYVLFFGIPCTAILLM---LPKEIIQTLYERGAFTAQDTI------LVSSYLSI 73 L + ++E+VL +P TA + L ++ + L E A D LV +L Sbjct: 11 LSHGSLEHVLL--VP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-- 65 Query: 74 YSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMG-FVIAIGLFPFIGGYGIATAEV 132 G++ S V S+ + V L++ + F ++ G I Sbjct: 66 ------GYVSSLVEPSKVGQFDQV--------LNLCLTEFENC-----YLEGNDIHALAA 106 Query: 133 SWVWVNTICLAVA--LLK-----RRQIDLPFQTIY-------------RILSIF------ 166 + N L L+K R PF ++++IF Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166 Query: 167 ------------ISSGLMGMFIVFFKPCLFNQLS--AETAFSPF-KNLAII--LSGAVLV 209 L+G I F L ++L A F + L I+ L Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNT 225 Query: 210 ----YLCS--ISL-LLGKGFLASL 226 YL S IS L+G + L Sbjct: 226 PDKDYLLSIPISCPLIG---VIQL 246 Score = 40.3 bits (94), Expect = 4e-04 Identities = 45/227 (19%), Positives = 72/227 (31%), Gaps = 80/227 (35%) Query: 3 ALLPKLSSAIQLENKQQSSELRN--RAIEYVLFFGIPCT-----AILLMLPKEIIQTLYE 55 AL KL + ++N A P A+ + + Q L Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMA---KRPFDKKSNSALFRAVGEGNAQ-LV- 157 Query: 56 RGA-FTAQDTILVSSYL----SIYST--EIVGFLLSRV--LLSE----------FYARN- 95 A F Q Y +Y T +VG L+ LSE + + Sbjct: 158 --AIFGGQGNT--DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213 Query: 96 DV--------KTPAKFYILSI-----VMG------FVIA---IGLFP------FIG--GY 125 ++ TP K Y+LSI ++G +V+ +G P G G+ Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273 Query: 126 --GIATAEV-----SW--VWVNTICLAVALL----KRRQIDLPFQTI 159 G+ TA SW +V+ A+ +L R P ++ Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNTSL 319 >3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Score = 30.9 bits (69), Expect = 0.25 Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 103 FYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRI 162 Y +SI + V L I + + V + + + + K R P +++ Sbjct: 647 IYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKL 706 Query: 163 LSIFISSGLMGMFIVFF 179 IF + ++G + Sbjct: 707 KEIFATGVVLGGYQAIM 723 >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, cytoplasm, oxidoreductase, phospholipid biosynthesis, structural genomics; HET: EPE; 2.10A {Coxiella burnetii rsa 493} Length = 356 Score = 29.1 bits (64), Expect = 0.97 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163 + AL ++ I++P ++RIL Sbjct: 308 LYNTDQVHALAQKHAIEMPLTFQVHRIL 335 >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335 Score = 28.8 bits (63), Expect = 1.2 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%) Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163 T A L + D +IYR+L Sbjct: 291 YKTAEKAYRLSSKINADTKLLDSIYRVL 318 >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genomics, joint center for structural genomics, JCSG; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima MSB8} Length = 335 Score = 28.3 bits (62), Expect = 1.6 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163 T+ + + K +ID+P + +YR++ Sbjct: 283 AFTVKAVMKIAKENKIDMPISEEVYRVV 310 >3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Score = 27.8 bits (61), Expect = 2.1 Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 5/148 (3%) Query: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60 AA+ ++ + ++ + ++ N + L + ++ ++I E Sbjct: 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVV 353 Query: 61 AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120 A L L + + V D+ +S + + + Sbjct: 354 A----LAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409 Query: 121 FIGGYGIATAEVSWVWV-NTICLAVALL 147 W+ I L+ A L Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGLSAAAL 437 >2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Length = 440 Score = 26.3 bits (57), Expect = 6.6 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%) Query: 43 LMLPKEIIQTLYERGAFTAQDTI-LVSSYLS--IYSTEIVGFL 82 L L +EII+ + A + ++ ++ I +I Sbjct: 1 LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALA 43 >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 Score = 25.9 bits (56), Expect = 9.0 Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60 + LLPK+ + I ++ ++ R + I A+ + K + L T Sbjct: 74 ITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT 133 Query: 61 AQ 62 Q Sbjct: 134 VQ 135 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.142 0.411 Gapped Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,825,364 Number of extensions: 78528 Number of successful extensions: 211 Number of sequences better than 10.0: 1 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 17 Length of query: 235 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 146 Effective length of database: 3,535,514 Effective search space: 516185044 Effective search space used: 516185044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 55 (25.5 bits)