RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.477_1
         (235 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 52/264 (19%), Positives = 84/264 (31%), Gaps = 88/264 (33%)

Query: 23  LRNRAIEYVLFFGIPCTAILLM---LPKEIIQTLYERGAFTAQDTI------LVSSYLSI 73
           L + ++E+VL   +P TA   +   L ++  + L E     A D        LV  +L  
Sbjct: 11  LSHGSLEHVLL--VP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-- 65

Query: 74  YSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMG-FVIAIGLFPFIGGYGIATAEV 132
                 G++ S V  S+    + V        L++ +  F        ++ G  I     
Sbjct: 66  ------GYVSSLVEPSKVGQFDQV--------LNLCLTEFENC-----YLEGNDIHALAA 106

Query: 133 SWVWVNTICLAVA--LLK-----RRQIDLPFQTIY-------------RILSIF------ 166
             +  N   L     L+K     R     PF                 ++++IF      
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166

Query: 167 ------------ISSGLMGMFIVFFKPCLFNQLS--AETAFSPF-KNLAII--LSGAVLV 209
                           L+G  I F    L ++L      A   F + L I+  L      
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNT 225

Query: 210 ----YLCS--ISL-LLGKGFLASL 226
               YL S  IS  L+G   +  L
Sbjct: 226 PDKDYLLSIPISCPLIG---VIQL 246



 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 45/227 (19%), Positives = 72/227 (31%), Gaps = 80/227 (35%)

Query: 3   ALLPKLSSAIQLENKQQSSELRN--RAIEYVLFFGIPCT-----AILLMLPKEIIQTLYE 55
           AL  KL         +    ++N   A         P       A+   + +   Q L  
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMA---KRPFDKKSNSALFRAVGEGNAQ-LV- 157

Query: 56  RGA-FTAQDTILVSSYL----SIYST--EIVGFLLSRV--LLSE----------FYARN- 95
             A F  Q       Y      +Y T   +VG L+      LSE           + +  
Sbjct: 158 --AIFGGQGNT--DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213

Query: 96  DV--------KTPAKFYILSI-----VMG------FVIA---IGLFP------FIG--GY 125
           ++         TP K Y+LSI     ++G      +V+    +G  P        G  G+
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273

Query: 126 --GIATAEV-----SW--VWVNTICLAVALL----KRRQIDLPFQTI 159
             G+ TA       SW   +V+    A+ +L     R     P  ++
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNTSL 319


>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
           ATP-binding, hydrogen ION transport, hydrolase, ION
           transport; HET: ACP; 3.60A {Arabidopsis thaliana}
          Length = 885

 Score = 30.9 bits (69), Expect = 0.25
 Identities = 13/77 (16%), Positives = 28/77 (36%)

Query: 103 FYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRI 162
            Y +SI +  V    L   I  +  +   V  + +      + + K R    P    +++
Sbjct: 647 IYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKL 706

Query: 163 LSIFISSGLMGMFIVFF 179
             IF +  ++G +    
Sbjct: 707 KEIFATGVVLGGYQAIM 723


>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
           cytoplasm, oxidoreductase, phospholipid biosynthesis,
           structural genomics; HET: EPE; 2.10A {Coxiella burnetii
           rsa 493}
          Length = 356

 Score = 29.1 bits (64), Expect = 0.97
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163
           +       AL ++  I++P    ++RIL
Sbjct: 308 LYNTDQVHALAQKHAIEMPLTFQVHRIL 335


>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
           {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
          Length = 335

 Score = 28.8 bits (63), Expect = 1.2
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163
             T   A  L  +   D     +IYR+L
Sbjct: 291 YKTAEKAYRLSSKINADTKLLDSIYRVL 318


>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genomics,
           joint center for structural genomics, JCSG; HET: MSE NDP
           G3H G3P; 2.00A {Thermotoga maritima MSB8}
          Length = 335

 Score = 28.3 bits (62), Expect = 1.6
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163
             T+   + + K  +ID+P  + +YR++
Sbjct: 283 AFTVKAVMKIAKENKIDMPISEEVYRVV 310


>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter)
           MATE-like MDR efflux...; multidrug transporter,
           cation-bound, transport protein; 3.65A {Vibrio cholerae}
           PDB: 3mku_A
          Length = 460

 Score = 27.8 bits (61), Expect = 2.1
 Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 5/148 (3%)

Query: 1   MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60
            AA+  ++   +  ++ + ++   N  +   L        + ++  ++I     E     
Sbjct: 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVV 353

Query: 61  AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120
           A    L    L   +       +  V         D+        +S  +  +    +  
Sbjct: 354 A----LAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409

Query: 121 FIGGYGIATAEVSWVWV-NTICLAVALL 147
                          W+   I L+ A L
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGLSAAAL 437


>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
          {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
          PDB: 1azy_A 1tpt_A 1otp_A
          Length = 440

 Score = 26.3 bits (57), Expect = 6.6
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 43 LMLPKEIIQTLYERGAFTAQDTI-LVSSYLS--IYSTEIVGFL 82
          L L +EII+   +  A + ++    ++      I   +I    
Sbjct: 1  LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALA 43


>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
           elongation complex, transcription/DNA/RNA complex; 2.10A
           {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
           1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
           3e3j_C* 1aro_P 2pi4_A* 2pi5_A
          Length = 883

 Score = 25.9 bits (56), Expect = 9.0
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 1   MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60
           +  LLPK+ + I    ++  ++   R   +     I   A+  +  K  +  L      T
Sbjct: 74  ITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT 133

Query: 61  AQ 62
            Q
Sbjct: 134 VQ 135


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,825,364
Number of extensions: 78528
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 17
Length of query: 235
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 146
Effective length of database: 3,535,514
Effective search space: 516185044
Effective search space used: 516185044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.5 bits)