BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.477_1 (235 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.477_1 Length = 235 Score = 468 bits (1203), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT Sbjct: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60 Query: 61 AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120 AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP Sbjct: 61 AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120 Query: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK Sbjct: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180 Query: 181 PCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDKG 235 PCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDKG Sbjct: 181 PCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDKG 235 >gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 277 bits (709), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 145/232 (62%), Positives = 181/232 (78%), Gaps = 2/232 (0%) Query: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60 M +LP LS +++ +NKQ+S EL+N+AIE + FFGIP L ML KEI+QTLYERGAF+ Sbjct: 287 MIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFS 346 Query: 61 AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120 +Q+TILVSS+LSIYS I+ +LS+ L + FYA+ND+K P KF I+SI + IAIG FP Sbjct: 347 SQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFP 406 Query: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180 FIGGYGIA AEVS WVNTICLA+ LLKR+QI+LPF+TIYRILS+ IS+GLMG FI+ F+ Sbjct: 407 FIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFR 466 Query: 181 PCLFNQL-SAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLK 231 P FNQ SA T F PFKNL I+LSGA+LVYL SI L LGK FL+ L+ ++ Sbjct: 467 P-YFNQFSSATTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIR 517 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 24.3 bits (51), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 168 SSGLMGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLG 219 +SGL GM I F + + + A + S KNL +I +G + + L S+ LG Sbjct: 146 ASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLG 197 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 23.1 bits (48), Expect = 4.9, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 15/55 (27%) Query: 3 ALLPKLSSAIQLENKQQSSEL---------------RNRAIEYVLFFGIPCTAIL 42 ALL ++S +I K SSE+ R++A EYV G +AIL Sbjct: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 >gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%) Query: 18 QQSSELRNRAIEYVLFFGIPCTAILLMLPKEI------IQTLYERGA--FTAQDTILVSS 69 E N EY + P AILLMLP I I +Y G+ + + L+ S Sbjct: 166 NDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCS 225 Query: 70 YLSIYSTEIVG--FLLSRVLLSEFY 92 L ++S + + F+L VL S Y Sbjct: 226 RLPVWSGKKIHRKFVLPIVLCSVAY 250 >gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] Length = 833 Score = 22.7 bits (47), Expect = 6.3, Method: Compositional matrix adjust. Identities = 10/34 (29%), Positives = 19/34 (55%) Query: 23 LRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYER 56 +RN +L+ I C +L+ LP + Q++ +R Sbjct: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.329 0.142 0.411 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 134,268 Number of Sequences: 1233 Number of extensions: 5108 Number of successful extensions: 20 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 9 length of query: 235 length of database: 328,796 effective HSP length: 71 effective length of query: 164 effective length of database: 241,253 effective search space: 39565492 effective search space used: 39565492 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 37 (18.9 bits)