Query         537021.9.peg.493_1
Match_columns 64
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Tue May 24 23:08:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_493.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR02627 rhamnulo_kin rhamnul  57.4     5.5 0.00014   20.7   1.4   15   42-56    345-359 (460)
  2 KOG0080 consensus               39.4      17 0.00044   18.0   1.6   22   38-59    101-122 (209)
  3 KOG0854 consensus               33.5      32 0.00081   16.6   2.2   23   33-55     74-96  (224)
  4 KOG0083 consensus               18.8      69  0.0018   14.7   1.7   20   41-60     91-110 (192)
  5 COG0025 NhaP NhaP-type Na+/H+   18.1      76  0.0019   14.5   1.7   29    1-29    279-307 (429)
  6 PRK01018 50S ribosomal protein  17.6      62  0.0016   15.0   1.2   15   42-56     46-60  (99)
  7 pfam01779 Ribosomal_L29e Ribos  15.5      45  0.0011   15.7   0.1   11   25-35     11-21  (40)
  8 COG3821 Predicted membrane pro  14.1      84  0.0021   14.2   1.1   15    5-19     69-83  (234)
  9 pfam05961 Chordopox_A13L Chord  13.6   1E+02  0.0026   13.8   1.4   23   16-42      1-23  (68)
 10 pfam08771 Rapamycin_bind Rapam  13.4 1.2E+02   0.003   13.4   3.2   29   33-61      3-36  (100)

No 1  
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449    Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=57.42  E-value=5.5  Score=20.72  Aligned_cols=15  Identities=47%  Similarity=0.864  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHCCHH
Q ss_conf             999999996214234
Q 537021.9.peg.4   42 WIEEIKYYCKEANIV   56 (64)
Q Consensus        42 wieeikyyckeaniv   56 (64)
                      -++||+-||||.+-+
T Consensus       345 M~~eI~~yCREt~Q~  359 (460)
T TIGR02627       345 MVEEIQAYCRETNQP  359 (460)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             799999975423788


No 2  
>KOG0080 consensus
Probab=39.44  E-value=17  Score=18.01  Aligned_cols=22  Identities=27%  Similarity=0.752  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             9999999999996214234334
Q 537021.9.peg.4   38 SWIIWIEEIKYYCKEANIVSMF   59 (64)
Q Consensus        38 swiiwieeikyyckeanivsmf   59 (64)
                      .--+|..|+.-||...||+.|.
T Consensus       101 kLd~W~~Eld~Ystn~diikml  122 (209)
T KOG0080         101 KLDIWLKELDLYSTNPDIIKML  122 (209)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHH
T ss_conf             5999999887644881376765


No 3  
>KOG0854 consensus
Probab=33.50  E-value=32  Score=16.57  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999999621423
Q 537021.9.peg.4   33 IRGIISWIIWIEEIKYYCKEANI   55 (64)
Q Consensus        33 irgiiswiiwieeikyyckeani   55 (64)
                      +...-|-.-||+.||-||++.|-
T Consensus        74 ~d~vesH~~Wi~DIks~~~~~~~   96 (224)
T KOG0854          74 VDDVESHKDWIKDIKSYAKVKNH   96 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             31677788999999998742677


No 4  
>KOG0083 consensus
Probab=18.81  E-value=69  Score=14.71  Aligned_cols=20  Identities=40%  Similarity=0.803  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHCCHHHHHH
Q ss_conf             99999999962142343343
Q 537021.9.peg.4   41 IWIEEIKYYCKEANIVSMFG   60 (64)
Q Consensus        41 iwieeikyyckeanivsmfg   60 (64)
                      -|..||+-|.||+--+...|
T Consensus        91 ~wlsei~ey~k~~v~l~llg  110 (192)
T KOG0083          91 AWLSEIHEYAKEAVALMLLG  110 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999988667675442


No 5  
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=18.11  E-value=76  Score=14.49  Aligned_cols=29  Identities=17%  Similarity=0.669  Sum_probs=24.0

Q ss_pred             CCCHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             94003333204089999999999999987
Q 537021.9.peg.4    1 LWDKIDYFASSNIFIMIGMIISMAICKAH   29 (64)
Q Consensus         1 lwdkidyfassnifimigmiismaickah   29 (64)
                      .|+.+|++..+-+|+.+|..++...-...
T Consensus       279 fwe~l~~~ln~~iFiLlG~~i~~~~~~~~  307 (429)
T COG0025         279 FWEVLDFLLNGLLFVLLGAQLPLSLLLAL  307 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999988458897775


No 6  
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=17.64  E-value=62  Score=14.95  Aligned_cols=15  Identities=40%  Similarity=0.600  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHCCHH
Q ss_conf             999999996214234
Q 537021.9.peg.4   42 WIEEIKYYCKEANIV   56 (64)
Q Consensus        42 wieeikyyckeaniv   56 (64)
                      -.++|.|||+.+++-
T Consensus        46 ~k~~ie~ya~l~~vp   60 (99)
T PRK01018         46 IKEDIMYYAKLSDIP   60 (99)
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999988636998


No 7  
>pfam01779 Ribosomal_L29e Ribosomal L29e protein family.
Probab=15.54  E-value=45  Score=15.74  Aligned_cols=11  Identities=55%  Similarity=0.567  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99987689999
Q 537021.9.peg.4   25 ICKAHRNCIRG   35 (64)
Q Consensus        25 ickahrncirg   35 (64)
                      -+|+|||-|..
T Consensus        11 s~K~HRNGIkK   21 (40)
T pfam01779        11 NRKAHRNGIKK   21 (40)
T ss_pred             HHHHHHCCCCC
T ss_conf             27878654667


No 8  
>COG3821 Predicted membrane protein [Function unknown]
Probab=14.09  E-value=84  Score=14.25  Aligned_cols=15  Identities=33%  Similarity=0.567  Sum_probs=11.0

Q ss_pred             HHHHHCCCHHHHHHH
Q ss_conf             333320408999999
Q 537021.9.peg.4    5 IDYFASSNIFIMIGM   19 (64)
Q Consensus         5 idyfassnifimigm   19 (64)
                      -.+||||++++.-|-
T Consensus        69 taFFASstlialgg~   83 (234)
T COG3821          69 TAFFASSTLIALGGC   83 (234)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             358877119999999


No 9  
>pfam05961 Chordopox_A13L Chordopoxvirus A13L protein. This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus.
Probab=13.55  E-value=1e+02  Score=13.83  Aligned_cols=23  Identities=48%  Similarity=0.801  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999876899999999999
Q 537021.9.peg.4   16 MIGMIISMAICKAHRNCIRGIISWIIW   42 (64)
Q Consensus        16 migmiismaickahrncirgiiswiiw   42 (64)
                      |||-++-+.||-|    +-|.|-+-|+
T Consensus         1 MI~~llLi~ICVa----vi~lIvYgiY   23 (68)
T pfam05961         1 MIGDLILVIICVA----IIGLIVYGIY   23 (68)
T ss_pred             CHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf             9178999999999----9999999885


No 10 
>pfam08771 Rapamycin_bind Rapamycin binding domain. This domain forms an alpha helical structure and binds to rapamycin.
Probab=13.35  E-value=1.2e+02  Score=13.44  Aligned_cols=29  Identities=34%  Similarity=0.777  Sum_probs=17.5

Q ss_pred             HHHHHHHH-HHHHHH----HHHHHHCCHHHHHHH
Q ss_conf             99999999-999999----999621423433430
Q 537021.9.peg.4   33 IRGIISWI-IWIEEI----KYYCKEANIVSMFGL   61 (64)
Q Consensus        33 irgiiswi-iwieei----kyyckeanivsmfgl   61 (64)
                      ||--|+|- .|.|.+    +-|+.+-|+..||..
T Consensus         3 iRvAiLW~E~W~e~LeeAsr~yf~~~n~~~m~~~   36 (100)
T pfam08771         3 IRVAILWHELWYEGLEEASRAYFGDRNVEGMFEI   36 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             6999869999999999999998125889999999


Done!