Query 537021.9.peg.493_1
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 22:46:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_493.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z8y_J Spike glycoprotein E2; 36.2 23 0.00097 16.1 2.9 28 6-33 7-35 (36)
2 3mhs_B Protein SUS1; multi-pro 7.9 1.1E+02 0.0048 12.3 1.6 14 40-53 36-49 (96)
3 1ng7_A Poliovirus 3A-N, genome 7.8 1.2E+02 0.0049 12.3 1.2 12 43-54 31-42 (60)
4 1rg6_A Second splice variant P 5.6 35 0.0015 15.1 -2.5 30 4-33 22-58 (75)
5 2rbg_A Putative uncharacterize 4.2 1.2E+02 0.0051 12.2 -0.5 15 49-63 93-107 (126)
6 2hfh_A Genesis, HFH-2; HNF-3 h 4.2 1.9E+02 0.008 11.1 0.5 29 19-49 10-40 (109)
7 2dko_B Caspase-3; low barrier 4.2 78 0.0033 13.2 -1.5 30 28-59 31-62 (103)
8 3bkd_A Transmembrane domain of 4.1 2E+02 0.0082 11.1 1.9 14 32-45 10-23 (26)
9 3cpq_A 50S ribosomal protein L 4.0 2E+02 0.0084 11.0 1.4 15 42-56 51-65 (110)
10 1bh1_A Melittin; toxin, hemoly 3.9 2E+02 0.0086 10.9 0.9 5 36-40 16-20 (27)
No 1
>1z8y_J Spike glycoprotein E2; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus}
Probab=36.17 E-value=23 Score=16.13 Aligned_cols=28 Identities=32% Similarity=0.669 Sum_probs=21.6
Q ss_pred HHHHCCCHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 3332040899999999-999999876899
Q 537021.9.peg.4 6 DYFASSNIFIMIGMII-SMAICKAHRNCI 33 (64)
Q Consensus 6 dyfassnifimigmii-smaickahrnci 33 (64)
--.||...-+|+|.-. +...|.|.|.|.
T Consensus 7 ~~~a~at~a~~~gvsva~~c~c~arrecl 35 (36)
T 1z8y_J 7 LAVASATVAMMIGVTVAVLCACLARRECL 35 (36)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 69998899999958999999999998742
No 2
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A
Probab=7.90 E-value=1.1e+02 Score=12.33 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999996214
Q 537021.9.peg.4 40 IIWIEEIKYYCKEA 53 (64)
Q Consensus 40 iiwieeikyyckea 53 (64)
-=|..++|-+|++-
T Consensus 36 cGW~Devk~~~r~~ 49 (96)
T 3mhs_B 36 EGWVDKVKDLTKSE 49 (96)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 78689999999999
No 3
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=7.80 E-value=1.2e+02 Score=12.30 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999962142
Q 537021.9.peg.4 43 IEEIKYYCKEAN 54 (64)
Q Consensus 43 ieeikyyckean 54 (64)
-||+.-|||+.+
T Consensus 31 seEVReYCk~kg 42 (60)
T 1ng7_A 31 SQEVRDYCEKKG 42 (60)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHCC
T ss_conf 599999999779
No 4
>1rg6_A Second splice variant P63; P73 SAM-like domain, gene regulation; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=5.62 E-value=35 Score=15.15 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=21.2
Q ss_pred HHHHHHCCCHHHHH-------HHHHHHHHHHHHHHHH
Q ss_conf 03333204089999-------9999999999876899
Q 537021.9.peg.4 4 KIDYFASSNIFIMI-------GMIISMAICKAHRNCI 33 (64)
Q Consensus 4 kidyfassnifimi-------gmiismaickahrnci 33 (64)
-||||.+.|++-|. .-.-+|.|-..|||-|
T Consensus 22 ~Id~F~~qgl~si~qLe~~sleDL~~mkIp~~~r~~I 58 (75)
T 1rg6_A 22 CLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAI 58 (75)
T ss_dssp SHHHHHHHTCCSGGGGSSCCHHHHHTTTCCTHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHCCHHHHHCCCCCHHHHHHH
T ss_conf 9999998252159988516898886277737776110
No 5
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=4.22 E-value=1.2e+02 Score=12.19 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=9.4
Q ss_pred HHHHCCHHHHHHHCC
Q ss_conf 962142343343004
Q 537021.9.peg.4 49 YCKEANIVSMFGLYS 63 (64)
Q Consensus 49 yckeanivsmfglys 63 (64)
||.|.|-++|--+++
T Consensus 93 YCDd~nk~~m~Ki~~ 107 (126)
T 2rbg_A 93 YCDDENKVFMSKIVD 107 (126)
T ss_dssp EECGGGHHHHHHHHH
T ss_pred EECCCCHHHHHHHHH
T ss_conf 967987028999988
No 6
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=4.22 E-value=1.9e+02 Score=11.12 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=17.8
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999--8768999999999999999999
Q 537021.9.peg.4 19 MIISMAICK--AHRNCIRGIISWIIWIEEIKYY 49 (64)
Q Consensus 19 miismaick--ahrncirgiiswiiwieeikyy 49 (64)
.+|.|||.. ..+-.++.|..||- +...||
T Consensus 10 ~LI~~Ai~~sp~~~ltL~eIy~~I~--~~fPyf 40 (109)
T 2hfh_A 10 ALITMAILQSPQKKLTLSGICEFIS--NRFPYY 40 (109)
T ss_dssp HHHHHHHHTCSSSCBCHHHHHHHHH--TTCHHH
T ss_pred HHHHHHHHHCCCCCEEHHHHHHHHH--HHCCCC
T ss_conf 9999999859888710999999999--749753
No 7
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation damage, tetrahedral intermediate, protease, hydrolase; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B 1rhm_B* 1rhq_B 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=4.22 E-value=78 Score=13.24 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHH
Q ss_conf 87689999999999--999999996214234334
Q 537021.9.peg.4 28 AHRNCIRGIISWII--WIEEIKYYCKEANIVSMF 59 (64)
Q Consensus 28 ahrncirgiiswii--wieeikyyckeanivsmf 59 (64)
|.||...| ||-| ..+.++-+.+...+.+|+
T Consensus 31 S~R~~~~G--SwfIq~L~~~l~~~~~~~~l~~il 62 (103)
T 2dko_B 31 SWRNSKDG--SWFIQSLCAMLKQYADKLEFMHIL 62 (103)
T ss_dssp CEEETTTE--EHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred EEECCCCC--CHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 66479999--889999999999868998799999
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=4.13 E-value=2e+02 Score=11.05 Aligned_cols=14 Identities=43% Similarity=0.947 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q 537021.9.peg.4 32 CIRGIISWIIWIEE 45 (64)
Q Consensus 32 cirgiiswiiwiee 45 (64)
.|-||..-|.||-+
T Consensus 10 siigilhlilwild 23 (26)
T 3bkd_A 10 SIMGILHLILWILD 23 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999997
No 9
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=4.00 E-value=2e+02 Score=10.99 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCHH
Q ss_conf 999999996214234
Q 537021.9.peg.4 42 WIEEIKYYCKEANIV 56 (64)
Q Consensus 42 wieeikyyckeaniv 56 (64)
-.+++.+||++.|+-
T Consensus 51 ~~~~i~~~c~~~~Vp 65 (110)
T 3cpq_A 51 LEEDVKYYAKLSNIP 65 (110)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCE
T ss_conf 999999999975967
No 10
>1bh1_A Melittin; toxin, hemolytic polypeptide; NMR {Apis mellifera} SCOP: j.19.1.1 PDB: 2mlt_A
Probab=3.90 E-value=2e+02 Score=10.94 Aligned_cols=5 Identities=80% Similarity=1.810 Sum_probs=0.0
Q ss_pred HHHHH
Q ss_conf 99999
Q 537021.9.peg.4 36 IISWI 40 (64)
Q Consensus 36 iiswi 40 (64)
.||||
T Consensus 16 liswi 20 (27)
T 1bh1_A 16 LISWI 20 (27)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
Done!