RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.493_1 (64 letters) >3kg4_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Mannheimia succiniciproducens MBEL55E} Length = 235 Score = 25.6 bits (56), Expect = 2.9 Identities = 7/21 (33%), Positives = 10/21 (47%) Query: 29 HRNCIRGIISWIIWIEEIKYY 49 + RGI+S I W I + Sbjct: 34 TPSAARGILSAIHWKPAINWV 54 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.332 0.142 0.478 Gapped Lambda K H 0.267 0.0603 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 624,580 Number of extensions: 21657 Number of successful extensions: 65 Number of sequences better than 10.0: 1 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 10 Length of query: 64 Length of database: 5,693,230 Length adjustment: 35 Effective length of query: 29 Effective length of database: 4,844,690 Effective search space: 140496010 Effective search space used: 140496010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.3 bits)