RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.493_1
         (64 letters)



>3kg4_A Uncharacterized protein; structural genomics, unknown function,
          PSI-2, protein structure initiative; 1.95A {Mannheimia
          succiniciproducens MBEL55E}
          Length = 235

 Score = 25.6 bits (56), Expect = 2.9
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 29 HRNCIRGIISWIIWIEEIKYY 49
            +  RGI+S I W   I + 
Sbjct: 34 TPSAARGILSAIHWKPAINWV 54


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.332    0.142    0.478 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 624,580
Number of extensions: 21657
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 10
Length of query: 64
Length of database: 5,693,230
Length adjustment: 35
Effective length of query: 29
Effective length of database: 4,844,690
Effective search space: 140496010
Effective search space used: 140496010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.3 bits)