Query 537021.9.peg.509_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 20:54:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_509.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3cec_A Putative antidote prot 15.0 52 0.0015 15.8 0.6 18 24-41 28-45 (56)
2 >2ict_A Antitoxin HIGA; helix- 11.9 72 0.0021 15.1 0.6 18 24-41 18-35 (46)
3 >2pv4_A Uncharacterized protei 8.3 1.6E+02 0.0049 13.2 1.3 20 9-28 126-145 (145)
4 >2w25_A Probable transcription 7.7 1.8E+02 0.0053 13.0 1.3 28 14-41 8-35 (56)
5 >2w0y_A APH, alkaline phosphat 7.1 1.3E+02 0.0038 13.8 0.3 21 16-36 27-47 (62)
6 >1sfu_A 34L protein; protein/Z 5.4 1.9E+02 0.0055 12.9 0.4 15 27-41 29-43 (75)
7 >2ia0_A Putative HTH-type tran 5.3 2.6E+02 0.0078 12.2 1.3 28 14-41 18-45 (66)
8 >1g5h_A Mitochondrial DNA poly 5.3 94 0.0028 14.4 -1.2 23 15-37 14-36 (54)
9 >3i4p_A Transcriptional regula 5.2 2.3E+02 0.0068 12.5 0.7 28 14-41 4-31 (53)
10 >2d0o_A DIOL dehydratase-react 5.2 1.5E+02 0.0043 13.5 -0.3 36 5-40 54-92 (131)
No 1
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=14.97 E-value=52 Score=15.77 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 677651998875321776
Q 537021.9.peg.5 24 KIMAITAKELSKRISISR 41 (45)
Q Consensus 24 kimaitakelskrisisr 41 (45)
.-|.++.++|.+++.+||
T Consensus 28 e~~gis~~~lA~~lgvs~ 45 (56)
T 3cec_A 28 DDLDINTANFAEILGVSN 45 (56)
T ss_dssp HHHTCCHHHHHHHHTSCH
T ss_pred HHCCCCHHHHHHHHCCCH
T ss_conf 987999999999978278
No 2
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=11.85 E-value=72 Score=15.05 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 677651998875321776
Q 537021.9.peg.5 24 KIMAITAKELSKRISISR 41 (45)
Q Consensus 24 kimaitakelskrisisr 41 (45)
.-|.++..|+.+++.+||
T Consensus 18 e~~gis~~~lA~~lgvs~ 35 (46)
T 2ict_A 18 DELNVSLREFARAXEIAP 35 (46)
T ss_dssp HHHTCCHHHHHHHHTCCH
T ss_pred HHCCCCHHHHHHHHHHHH
T ss_conf 997999999999997778
No 3
>>2pv4_A Uncharacterized protein; YP_928494.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Shewanella amazonensis SB2B} (A:)
Probab=8.30 E-value=1.6e+02 Score=13.23 Aligned_cols=20 Identities=35% Similarity=0.442 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 66666646766533467765
Q 537021.9.peg.5 9 LKKALIDFSLISAHKKIMAI 28 (45)
Q Consensus 9 lkkalidfslisahkkimai 28 (45)
||||--|-++...-|.+|||
T Consensus 126 LKKAR~d~~m~~~fk~V~a~ 145 (145)
T 2pv4_A 126 LKKARTDRSXYNSXREVXGI 145 (145)
T ss_dssp HHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHCC
T ss_conf 99874288889889999749
No 4
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56)
Probab=7.66 E-value=1.8e+02 Score=13.04 Aligned_cols=28 Identities=29% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6467665334677651998875321776
Q 537021.9.peg.5 14 IDFSLISAHKKIMAITAKELSKRISISR 41 (45)
Q Consensus 14 idfslisahkkimaitakelskrisisr 41 (45)
.|..++.+-.+--.++..|+++++.+|+
T Consensus 8 ~D~~Il~~Lq~~~r~~~~elA~~lg~S~ 35 (56)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGLSV 35 (56)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCH
T ss_conf 9999999999848999999999989099
No 5
>>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} (A:365-426)
Probab=7.06 E-value=1.3e+02 Score=13.78 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 676653346776519988753
Q 537021.9.peg.5 16 FSLISAHKKIMAITAKELSKR 36 (45)
Q Consensus 16 fslisahkkimaitakelskr 36 (45)
-|...||..|.|.|..|..|-
T Consensus 27 esivaahtgitaltdrevakl 47 (62)
T 2w0y_A 27 ESIVAAHTGITALTDREVAKL 47 (62)
T ss_dssp HHHHHHHSSCCCCCHHHHHHH
T ss_pred CHHHHHCCCCCCCCHHHHHHH
T ss_conf 034440379777787888765
No 6
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=5.44 E-value=1.9e+02 Score=12.94 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 651998875321776
Q 537021.9.peg.5 27 AITAKELSKRISISR 41 (45)
Q Consensus 27 aitakelskrisisr 41 (45)
.+||++|+|.+.+++
T Consensus 29 ~~tA~~lAk~Lg~~K 43 (75)
T 1sfu_A 29 YTTAISLSNRLKINK 43 (75)
T ss_dssp EECHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHCCHH
T ss_conf 221999998863008
No 7
>>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66)
Probab=5.29 E-value=2.6e+02 Score=12.18 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6467665334677651998875321776
Q 537021.9.peg.5 14 IDFSLISAHKKIMAITAKELSKRISISR 41 (45)
Q Consensus 14 idfslisahkkimaitakelskrisisr 41 (45)
+|..++.+-.+---++..||++++.+|+
T Consensus 18 ~D~~IL~~L~~~~r~s~~ela~~lgls~ 45 (66)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKKPE 45 (66)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCH
T ss_conf 9999999999848999999999989099
No 8
>>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} (A:89-142)
Probab=5.28 E-value=94 Score=14.45 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46766533467765199887532
Q 537021.9.peg.5 15 DFSLISAHKKIMAITAKELSKRI 37 (45)
Q Consensus 15 dfslisahkkimaitakelskri 37 (45)
.|.|+||..---....||+||.-
T Consensus 14 ~frlvsae~lreilqdkelskeq 36 (54)
T 1g5h_A 14 AFRLVSPESIREILQDREPSKEQ 36 (54)
T ss_dssp CCEEECHHHHHHHHCC---CHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 65545564335400321132033
No 9
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53)
Probab=5.22 E-value=2.3e+02 Score=12.50 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6467665334677651998875321776
Q 537021.9.peg.5 14 IDFSLISAHKKIMAITAKELSKRISISR 41 (45)
Q Consensus 14 idfslisahkkimaitakelskrisisr 41 (45)
+|..++..-.+=--++..|+++++.+|+
T Consensus 4 ~D~~IL~~L~~dar~s~~elA~~lgis~ 31 (53)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLST 31 (53)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCH
T ss_conf 9999999999858999999999989199
No 10
>>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:1-76,A:369-404,A:592-610)
Probab=5.21 E-value=1.5e+02 Score=13.50 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=25.7
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32236666---6646766533467765199887532177
Q 537021.9.peg.5 5 IGISLKKA---LIDFSLISAHKKIMAITAKELSKRISIS 40 (45)
Q Consensus 5 igislkka---lidfslisahkkimaitakelskrisis 40 (45)
|.-.|+++ .-|+++|.-+.--|+.-|.|+++++.+.
T Consensus 54 I~kALekAGls~~DIdlIeINEA~m~~ia~~~~~~~~~~ 92 (131)
T 2d0o_A 54 LALVARGAGIAVSDISLIRINEAQMAMIAREIEQKLNID 92 (131)
T ss_dssp HHHHHHHHTCCGGGEEEEEEEECCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCEEEHHHHHHHHHHCCH
T ss_conf 999999829987772333321472004688999972851
Done!