Query 537021.9.peg.523_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 21:56:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_523.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2es9a1 a.247.1.1 (A:11-107) H 12.9 34 0.0025 15.3 1.2 11 9-19 2-12 (97) 2 d1vpua_ g.34.1.1 (A:) HIV-1 VP 8.7 67 0.0049 13.9 1.5 15 2-16 3-17 (45) 3 d1v7mv_ a.26.1.2 (V:) Thrombop 8.6 48 0.0035 14.6 0.7 10 20-29 124-133 (145) 4 d1eera_ a.26.1.2 (A:) Erythrop 8.2 56 0.0041 14.3 0.9 13 20-32 144-156 (166) 5 d1k8ta_ e.41.1.1 (A:) Adenylyl 7.5 76 0.0056 13.6 1.3 17 11-27 9-25 (509) 6 d1efaa1 a.35.1.5 (A:2-60) Lac 4.8 1.2E+02 0.0084 12.7 1.0 19 9-27 36-54 (59) 7 d2hsga1 a.35.1.5 (A:2-58) Gluc 4.4 1.3E+02 0.0095 12.4 1.0 20 8-27 34-53 (57) 8 d1qpza1 a.35.1.5 (A:2-58) Puri 4.4 1.3E+02 0.0096 12.4 1.0 20 8-27 33-52 (57) 9 d1q15a1 c.26.2.1 (A:206-501) b 4.0 1.2E+02 0.0089 12.5 0.7 19 7-25 216-234 (296) 10 d2pk8a1 d.274.1.1 (A:2-95) Hyp 3.8 1.2E+02 0.0089 12.6 0.5 25 6-30 9-36 (94) No 1 >d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]} Probab=12.91 E-value=34 Score=15.34 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=7.7 Q ss_pred HHHHHHHHHHH Q ss_conf 99866655311 Q 537021.9.peg.5 9 VIDRALDMTGY 19 (38) Q Consensus 9 vidraldmtgy 19 (38) |||.|||..|- T Consensus 2 vIdKALDFIg~ 12 (97) T d2es9a1 2 AIEKALDFIGG 12 (97) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHCC T ss_conf 06788887403 No 2 >d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]} Probab=8.70 E-value=67 Score=13.85 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 889999999866655 Q 537021.9.peg.5 2 LDKLIKGVIDRALDM 16 (38) Q Consensus 2 ldklikgvidraldm 16 (38) .|+||+-.+.||-|- T Consensus 3 IdrLi~RIrERAEDS 17 (45) T d1vpua_ 3 IDRLIDRITERAEDS 17 (45) T ss_dssp HHHHHHHHHHTTCHH T ss_pred HHHHHHHHHHHCCCC T ss_conf 899999999870257 No 3 >d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId: 9606]} Probab=8.58 E-value=48 Score=14.60 Aligned_cols=10 Identities=70% Similarity=0.909 Sum_probs=6.2 Q ss_pred HHHHHHHHHH Q ss_conf 0577651346 Q 537021.9.peg.5 20 VPSHLLRGKV 29 (38) Q Consensus 20 vpshllrgkv 29 (38) +-+++||||+ T Consensus 124 v~~nfLRGKv 133 (145) T d1v7mv_ 124 SFQHLLRGKV 133 (145) T ss_dssp HHHHHHHTTT T ss_pred HHHHHHHHHH T ss_conf 9999985668 No 4 >d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens) [TaxId: 9606]} Probab=8.21 E-value=56 Score=14.25 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 0577651346545 Q 537021.9.peg.5 20 VPSHLLRGKVFGY 32 (38) Q Consensus 20 vpshllrgkvfgy 32 (38) +-+.+|||||-=| T Consensus 144 v~~nfLRGKvrll 156 (166) T d1eera_ 144 VYSNFLRGKLKLY 156 (166) T ss_dssp HHHHHHHTHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999985679986 No 5 >d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor) {Bacillus anthracis [TaxId: 1392]} Probab=7.51 E-value=76 Score=13.58 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 86665531105776513 Q 537021.9.peg.5 11 DRALDMTGYVPSHLLRG 27 (38) Q Consensus 11 draldmtgyvpshllrg 27 (38) ++|+.-+|-||+|++.= T Consensus 9 e~Aik~sGIv~eH~~~~ 25 (509) T d1k8ta_ 9 EKALKASGLVPEHADAF 25 (509) T ss_dssp HHHHHHHCCCHHHHHHH T ss_pred HHHHHCCCCCHHHHHHH T ss_conf 45654049988999999 No 6 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.81 E-value=1.2e+02 Score=12.67 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9986665531105776513 Q 537021.9.peg.5 9 VIDRALDMTGYVPSHLLRG 27 (38) Q Consensus 9 vidraldmtgyvpshllrg 27 (38) -|..+.+-.||+|...-|. T Consensus 36 rI~~~a~~lgY~pn~~Ar~ 54 (59) T d1efaa1 36 KVEAAMAELNYIPNRVAQQ 54 (59) T ss_dssp HHHHHHHHHTCCCCHHHHH T ss_pred HHHHHHHHHCCCCCHHHHH T ss_conf 9999999988986999998 No 7 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=4.43 E-value=1.3e+02 Score=12.40 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99986665531105776513 Q 537021.9.peg.5 8 GVIDRALDMTGYVPSHLLRG 27 (38) Q Consensus 8 gvidraldmtgyvpshllrg 27 (38) --|..+.+..||.|...-|. T Consensus 34 ~rV~~aa~~lgY~pn~~A~~ 53 (57) T d2hsga1 34 KKVLETIERLGYRPNAVARG 53 (57) T ss_dssp HHHHHHHHHHTCCSCHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHH T ss_conf 99999999988697999997 No 8 >d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.35 E-value=1.3e+02 Score=12.40 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99986665531105776513 Q 537021.9.peg.5 8 GVIDRALDMTGYVPSHLLRG 27 (38) Q Consensus 8 gvidraldmtgyvpshllrg 27 (38) .-|-.+.+..||+|...-|. T Consensus 33 ~rV~~~a~~lgY~pn~~Ar~ 52 (57) T d1qpza1 33 NAVWAAIKELHYSPSAVARS 52 (57) T ss_dssp HHHHHHHHHHTCCCCHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHH T ss_conf 99999999988897999998 No 9 >d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Probab=4.05 E-value=1.2e+02 Score=12.54 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999866655311057765 Q 537021.9.peg.5 7 KGVIDRALDMTGYVPSHLL 25 (38) Q Consensus 7 kgvidraldmtgyvpshll 25 (38) |-++-+|+++.+|+|...+ T Consensus 216 K~iLR~a~~~~~~LP~~i~ 234 (296) T d1q15a1 216 KNILREYADSLQLLPKDIV 234 (296) T ss_dssp SHHHHHHHHHTSCSCHHHH T ss_pred HHHHHHHHHHCCCCCHHHH T ss_conf 7999999860798999993 No 10 >d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus furiosus [TaxId: 2261]} Probab=3.81 E-value=1.2e+02 Score=12.55 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=0.0 Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH Q ss_conf 99999866---65531105776513465 Q 537021.9.peg.5 6 IKGVIDRA---LDMTGYVPSHLLRGKVF 30 (38) Q Consensus 6 ikgvidra---ldmtgyvpshllrgkvf 30 (38) |-+.|+++ |.|.||-|.-+|-|+-| T Consensus 9 iL~~ie~~inELk~dG~ePDiiL~G~e~ 36 (94) T d2pk8a1 9 ILGEIEEKMNELKMDGFNPDIILFGREA 36 (94) T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEECHHH T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECHHH T ss_conf 9999999999998658998769974899 Done!