RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.523_1
         (38 letters)



>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta.
          Length = 868

 Score = 24.7 bits (53), Expect = 4.9
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 6   IKGVIDRALDMTGYVPSHLL-------RGKVFGYRQKVAA 38
           + G  D  + M  Y P+H         RG+V+GYR  + A
Sbjct: 741 MAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWA 780


>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584).  This
           protein is found in bacteria and eukaryotes. Proteins in
           this family are typically between 943 to 1234 amino
           acids in length. There are two conserved sequence
           motifs: GKT and YLP.
          Length = 1192

 Score = 25.0 bits (55), Expect = 5.0
 Identities = 4/15 (26%), Positives = 6/15 (40%)

Query: 2   LDKLIKGVIDRALDM 16
           +DKL   V  +    
Sbjct: 184 IDKLANAVHSKEGKF 198


>gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha.
          Length = 808

 Score = 24.9 bits (54), Expect = 5.1
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 8   GVIDRALDMTGYVPSHL-----LRGKVFGYR 33
           G  D  + M GY P HL      RG++ G+R
Sbjct: 684 GARDSEIAMGGYQPYHLSTRQPARGQIHGFR 714


>gnl|CDD|178741 PLN03200, PLN03200, cellulose synthase-interactive protein;
            Provisional.
          Length = 2102

 Score = 24.3 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 2    LDKLIKGVIDRALDMTGYVPSHL 24
            LD +  G+I+R LD+    P  L
Sbjct: 1436 LDMVKAGIIERVLDILPEAPDSL 1458


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.145    0.417 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 645,732
Number of extensions: 21241
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 9
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.0 bits)