RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.523_1
         (38 letters)



>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
          PSI-2, protein structure initiative; HET: PG4; 1.80A
          {Saccharomyces cerevisiae}
          Length = 432

 Score = 24.4 bits (52), Expect = 7.2
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 10/41 (24%)

Query: 3  DKLIK---------GVIDRALDMTGYVPSHLL-RGKVFGYR 33
          DKLIK           + R   +TG  P H L +G  F  R
Sbjct: 48 DKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSER 88


>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural
          genomics, medical structural genomics of pathogenic
          protozoa, MSGPP; 3.00A {Entamoeba histolytica}
          Length = 386

 Score = 23.9 bits (51), Expect = 8.8
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 10/41 (24%)

Query: 3  DKLIK---------GVIDRALDMTGYVPSHLL-RGKVFGYR 33
          ++LI            I R   ++G  P H L RG     +
Sbjct: 28 NQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEK 68


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.327    0.145    0.417 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 341,684
Number of extensions: 8559
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 38
Length of database: 5,693,230
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,402,302
Effective search space: 140459852
Effective search space used: 140459852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)