RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.523_1
         (38 letters)



>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 23.9 bits (51), Expect = 4.0
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 10/41 (24%)

Query: 3  DKLIK---------GVIDRALDMTGYVPSHLL-RGKVFGYR 33
          DKLI           +I+R    TG  P H L RG  F +R
Sbjct: 20 DKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.145    0.417 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 146,374
Number of extensions: 3592
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 2
Length of query: 38
Length of database: 2,407,596
Length adjustment: 11
Effective length of query: 27
Effective length of database: 2,256,566
Effective search space: 60927282
Effective search space used: 60927282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)