BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.523_1
         (38 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.523_1 
          Length = 38

 Score = 77.4 bits (189), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  VLDKLIKGVIDRALDMTGYVPSHLLRGKVFGYRQKVAA 38
          VLDKLIKGVIDRALDMTGYVPSHLLRGKVFGYRQKVAA
Sbjct: 1  VLDKLIKGVIDRALDMTGYVPSHLLRGKVFGYRQKVAA 38


>gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 307

 Score = 22.7 bits (47), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 4  KLIKGVIDRALDMTGYVPSHLLRG 27
          KLI G ID A+     +P+ LL+G
Sbjct: 71 KLISGEIDCAVHSAKDMPTKLLKG 94


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 21.9 bits (45), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 1   VLDKLIKGVIDRALDMTGYVPSHLLRGKV 29
           VLD  + G++  AL    Y+  HL +  V
Sbjct: 184 VLDISLAGMLATALSFFTYITYHLFKSNV 212


>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 440

 Score = 20.0 bits (40), Expect = 7.5,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 2   LDKLIKGVIDRALDMTGYVPSHLL 25
           ++++++ V+D A  M G+   +LL
Sbjct: 81  VERVVRQVVDAAERMAGFTVDNLL 104


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.145    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,659
Number of Sequences: 1233
Number of extensions: 523
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 38
length of database: 328,796
effective HSP length: 12
effective length of query: 26
effective length of database: 314,000
effective search space:  8164000
effective search space used:  8164000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)