Query         537021.9.peg.532_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 21:36:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_532.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1eys_H Photosynthetic reaction  15.9      66  0.0028   14.2   2.4   17   15-31     18-34  (259)
  2 1rzh_H Reaction center protein  15.7      67  0.0028   14.2   2.4   17   15-31     19-35  (260)
  3 2bai_A Genome polyprotein; zin  12.6      29  0.0012   16.0  -0.4   10   25-34     23-32  (32)
  4 2wjn_H Reaction center protein   8.3 1.2E+02  0.0052   12.9   2.1   16   16-31     20-36  (258)
  5 2qts_A Acid-sensing ION channe   4.4 2.1E+02   0.009   11.7   1.5   19    9-27     14-32  (438)
  6 2rh3_A Protein VIRC2; ribbon-h   4.2 2.2E+02  0.0093   11.7   1.1   16    1-16     31-46  (121)
  7 2ws9_4 P1; 3.00A {Equine rhini   4.1      65  0.0027   14.3  -2.0    9   21-29     21-29  (80)
  8 1qqp_4 FMDV, protein (genome p   4.0      37  0.0015   15.5  -3.3    9   21-29     21-29  (85)
  9 2kzi_A Engineered protein, ZHE   3.9 1.4E+02  0.0057   12.7  -0.5    6   28-33     37-42  (70)
 10 1edi_A Staphylococcal protein    3.8 1.3E+02  0.0055   12.8  -0.6    5   29-33     24-28  (56)

No 1  
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=15.89  E-value=66  Score=14.24  Aligned_cols=17  Identities=24%  Similarity=0.733  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999887444
Q 537021.9.peg.5   15 FLWIFIIVQSFYLQQRN   31 (38)
Q Consensus        15 flwifiivqsfylqqrn   31 (38)
                      -.|||..---||||..|
T Consensus        18 ~Fw~FFa~Lv~YL~rE~   34 (259)
T 1eys_H           18 AFWLFFFGLIIYLRRED   34 (259)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999861256


No 2  
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=15.71  E-value=67  Score=14.21  Aligned_cols=17  Identities=41%  Similarity=0.853  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999887444
Q 537021.9.peg.5   15 FLWIFIIVQSFYLQQRN   31 (38)
Q Consensus        15 flwifiivqsfylqqrn   31 (38)
                      -.|||..---||||..|
T Consensus        19 ~Fw~FFa~Li~YL~rE~   35 (260)
T 1rzh_H           19 SFWIFLAGLIYYLQTEN   35 (260)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999871256


No 3  
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=12.64  E-value=29  Score=15.98  Aligned_cols=10  Identities=60%  Similarity=0.737  Sum_probs=7.2

Q ss_pred             HHHHHHCCEE
Q ss_conf             9887444724
Q 537021.9.peg.5   25 FYLQQRNGFL   34 (38)
Q Consensus        25 fylqqrngfl   34 (38)
                      --||-||||.
T Consensus        23 salqyrngfy   32 (32)
T 2bai_A           23 SALQYRNGFY   32 (32)
T ss_dssp             HCSSSTTCCC
T ss_pred             HHHHHHCCCC
T ss_conf             5777522679


No 4  
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H*
Probab=8.26  E-value=1.2e+02  Score=12.92  Aligned_cols=16  Identities=25%  Similarity=0.698  Sum_probs=11.6

Q ss_pred             HH-HHHHHHHHHHHHHC
Q ss_conf             99-99999999887444
Q 537021.9.peg.5   16 LW-IFIIVQSFYLQQRN   31 (38)
Q Consensus        16 lw-ifiivqsfylqqrn   31 (38)
                      .| ||...--||||..|
T Consensus        20 FW~~FFa~Li~YL~rE~   36 (258)
T 2wjn_H           20 QWLVIWTVVLLYLRRED   36 (258)
T ss_dssp             HHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999862156


No 5  
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=4.35  E-value=2.1e+02  Score=11.74  Aligned_cols=19  Identities=21%  Similarity=0.459  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             6635689999999999988
Q 537021.9.peg.5    9 LLQWETFLWIFIIVQSFYL   27 (38)
Q Consensus         9 llqwetflwifiivqsfyl   27 (38)
                      ..-||.++|+.+++-++++
T Consensus        14 ~~~~eR~~W~~~~~~~~~~   32 (438)
T 2qts_A           14 RLSLKRVVWALCFMGSLAL   32 (438)
T ss_dssp             ---CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
T ss_conf             9945999999999999999


No 6  
>2rh3_A Protein VIRC2; ribbon-helix-helix, crown GALL tumor, plasmid, DNA binding protein; 1.70A {Agrobacterium tumefaciens} SCOP: a.43.1.10
Probab=4.16  E-value=2.2e+02  Score=11.66  Aligned_cols=16  Identities=44%  Similarity=0.690  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9266622866356899
Q 537021.9.peg.5    1 LQLIIRLCLLQWETFL   16 (38)
Q Consensus         1 lqliirlcllqwetfl   16 (38)
                      ||+|.|-.|-.+|..|
T Consensus        31 LqmILrrAL~dfe~mL   46 (121)
T 2rh3_A           31 LQMILRRALGDFENML   46 (121)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999888999997


No 7  
>2ws9_4 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_4
Probab=4.09  E-value=65  Score=14.28  Aligned_cols=9  Identities=78%  Similarity=1.257  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q ss_conf             999998874
Q 537021.9.peg.5   21 IVQSFYLQQ   29 (38)
Q Consensus        21 ivqsfylqq   29 (38)
                      ||..||.||
T Consensus        21 IiNNYYMQq   29 (80)
T 2ws9_4           21 IVQNFYMQQ   29 (80)
T ss_dssp             GGGGSSCHH
T ss_pred             HHHHHHHHH
T ss_conf             255899998


No 8  
>1qqp_4 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein-carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_4* 1fod_4 1fmd_4 1zba_4* 1zbe_4
Probab=4.00  E-value=37  Score=15.51  Aligned_cols=9  Identities=44%  Similarity=1.102  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q ss_conf             999998874
Q 537021.9.peg.5   21 IVQSFYLQQ   29 (38)
Q Consensus        21 ivqsfylqq   29 (38)
                      ||+.||.||
T Consensus        21 IinNyYMQq   29 (85)
T 1qqp_4           21 IINNYYMQQ   29 (85)
T ss_dssp             CSCCSSCHH
T ss_pred             HHHHHHHHH
T ss_conf             476899998


No 9  
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=3.85  E-value=1.4e+02  Score=12.73  Aligned_cols=6  Identities=50%  Similarity=0.883  Sum_probs=0.0

Q ss_pred             HHHCCE
Q ss_conf             744472
Q 537021.9.peg.5   28 QQRNGF   33 (38)
Q Consensus        28 qqrngf   33 (38)
                      .|||||
T Consensus        37 eQrn~f   42 (70)
T 2kzi_A           37 QQKRAF   42 (70)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 10 
>1edi_A Staphylococcal protein A; immunoglobulin-binding protein, repeat, transmembrane, cell WALL, signal, IGG-binding protein; NMR {Staphylococcus aureus} SCOP: a.8.1.1 PDB: 1edj_A 1edk_A 1edl_A
Probab=3.78  E-value=1.3e+02  Score=12.81  Aligned_cols=5  Identities=100%  Similarity=1.650  Sum_probs=0.0

Q ss_pred             HHCCE
Q ss_conf             44472
Q 537021.9.peg.5   29 QRNGF   33 (38)
Q Consensus        29 qrngf   33 (38)
                      |||||
T Consensus        24 Qrn~f   28 (56)
T 1edi_A           24 QRNGF   28 (56)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99889


Done!