Query 537021.9.peg.532_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 21:36:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_532.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1eys_H Photosynthetic reaction 15.9 66 0.0028 14.2 2.4 17 15-31 18-34 (259) 2 1rzh_H Reaction center protein 15.7 67 0.0028 14.2 2.4 17 15-31 19-35 (260) 3 2bai_A Genome polyprotein; zin 12.6 29 0.0012 16.0 -0.4 10 25-34 23-32 (32) 4 2wjn_H Reaction center protein 8.3 1.2E+02 0.0052 12.9 2.1 16 16-31 20-36 (258) 5 2qts_A Acid-sensing ION channe 4.4 2.1E+02 0.009 11.7 1.5 19 9-27 14-32 (438) 6 2rh3_A Protein VIRC2; ribbon-h 4.2 2.2E+02 0.0093 11.7 1.1 16 1-16 31-46 (121) 7 2ws9_4 P1; 3.00A {Equine rhini 4.1 65 0.0027 14.3 -2.0 9 21-29 21-29 (80) 8 1qqp_4 FMDV, protein (genome p 4.0 37 0.0015 15.5 -3.3 9 21-29 21-29 (85) 9 2kzi_A Engineered protein, ZHE 3.9 1.4E+02 0.0057 12.7 -0.5 6 28-33 37-42 (70) 10 1edi_A Staphylococcal protein 3.8 1.3E+02 0.0055 12.8 -0.6 5 29-33 24-28 (56) No 1 >1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1 Probab=15.89 E-value=66 Score=14.24 Aligned_cols=17 Identities=24% Similarity=0.733 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 99999999999887444 Q 537021.9.peg.5 15 FLWIFIIVQSFYLQQRN 31 (38) Q Consensus 15 flwifiivqsfylqqrn 31 (38) -.|||..---||||..| T Consensus 18 ~Fw~FFa~Lv~YL~rE~ 34 (259) T 1eys_H 18 AFWLFFFGLIIYLRRED 34 (259) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999861256 No 2 >1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ... Probab=15.71 E-value=67 Score=14.21 Aligned_cols=17 Identities=41% Similarity=0.853 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 99999999999887444 Q 537021.9.peg.5 15 FLWIFIIVQSFYLQQRN 31 (38) Q Consensus 15 flwifiivqsfylqqrn 31 (38) -.|||..---||||..| T Consensus 19 ~Fw~FFa~Li~YL~rE~ 35 (260) T 1rzh_H 19 SFWIFLAGLIYYLQTEN 35 (260) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999871256 No 3 >2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1 Probab=12.64 E-value=29 Score=15.98 Aligned_cols=10 Identities=60% Similarity=0.737 Sum_probs=7.2 Q ss_pred HHHHHHCCEE Q ss_conf 9887444724 Q 537021.9.peg.5 25 FYLQQRNGFL 34 (38) Q Consensus 25 fylqqrngfl 34 (38) --||-||||. T Consensus 23 salqyrngfy 32 (32) T 2bai_A 23 SALQYRNGFY 32 (32) T ss_dssp HCSSSTTCCC T ss_pred HHHHHHCCCC T ss_conf 5777522679 No 4 >2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H* Probab=8.26 E-value=1.2e+02 Score=12.92 Aligned_cols=16 Identities=25% Similarity=0.698 Sum_probs=11.6 Q ss_pred HH-HHHHHHHHHHHHHC Q ss_conf 99-99999999887444 Q 537021.9.peg.5 16 LW-IFIIVQSFYLQQRN 31 (38) Q Consensus 16 lw-ifiivqsfylqqrn 31 (38) .| ||...--||||..| T Consensus 20 FW~~FFa~Li~YL~rE~ 36 (258) T 2wjn_H 20 QWLVIWTVVLLYLRRED 36 (258) T ss_dssp HHHHHHHHHHHTHHHHT T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999862156 No 5 >2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A Probab=4.35 E-value=2.1e+02 Score=11.74 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 6635689999999999988 Q 537021.9.peg.5 9 LLQWETFLWIFIIVQSFYL 27 (38) Q Consensus 9 llqwetflwifiivqsfyl 27 (38) ..-||.++|+.+++-++++ T Consensus 14 ~~~~eR~~W~~~~~~~~~~ 32 (438) T 2qts_A 14 RLSLKRVVWALCFMGSLAL 32 (438) T ss_dssp ---CCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHH T ss_conf 9945999999999999999 No 6 >2rh3_A Protein VIRC2; ribbon-helix-helix, crown GALL tumor, plasmid, DNA binding protein; 1.70A {Agrobacterium tumefaciens} SCOP: a.43.1.10 Probab=4.16 E-value=2.2e+02 Score=11.66 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 9266622866356899 Q 537021.9.peg.5 1 LQLIIRLCLLQWETFL 16 (38) Q Consensus 1 lqliirlcllqwetfl 16 (38) ||+|.|-.|-.+|..| T Consensus 31 LqmILrrAL~dfe~mL 46 (121) T 2rh3_A 31 LQMILRRALGDFENML 46 (121) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999888999997 No 7 >2ws9_4 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_4 Probab=4.09 E-value=65 Score=14.28 Aligned_cols=9 Identities=78% Similarity=1.257 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999998874 Q 537021.9.peg.5 21 IVQSFYLQQ 29 (38) Q Consensus 21 ivqsfylqq 29 (38) ||..||.|| T Consensus 21 IiNNYYMQq 29 (80) T 2ws9_4 21 IVQNFYMQQ 29 (80) T ss_dssp GGGGSSCHH T ss_pred HHHHHHHHH T ss_conf 255899998 No 8 >1qqp_4 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein-carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_4* 1fod_4 1fmd_4 1zba_4* 1zbe_4 Probab=4.00 E-value=37 Score=15.51 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999998874 Q 537021.9.peg.5 21 IVQSFYLQQ 29 (38) Q Consensus 21 ivqsfylqq 29 (38) ||+.||.|| T Consensus 21 IinNyYMQq 29 (85) T 1qqp_4 21 IINNYYMQQ 29 (85) T ss_dssp CSCCSSCHH T ss_pred HHHHHHHHH T ss_conf 476899998 No 9 >2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E Probab=3.85 E-value=1.4e+02 Score=12.73 Aligned_cols=6 Identities=50% Similarity=0.883 Sum_probs=0.0 Q ss_pred HHHCCE Q ss_conf 744472 Q 537021.9.peg.5 28 QQRNGF 33 (38) Q Consensus 28 qqrngf 33 (38) .||||| T Consensus 37 eQrn~f 42 (70) T 2kzi_A 37 QQKRAF 42 (70) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 10 >1edi_A Staphylococcal protein A; immunoglobulin-binding protein, repeat, transmembrane, cell WALL, signal, IGG-binding protein; NMR {Staphylococcus aureus} SCOP: a.8.1.1 PDB: 1edj_A 1edk_A 1edl_A Probab=3.78 E-value=1.3e+02 Score=12.81 Aligned_cols=5 Identities=100% Similarity=1.650 Sum_probs=0.0 Q ss_pred HHCCE Q ss_conf 44472 Q 537021.9.peg.5 29 QRNGF 33 (38) Q Consensus 29 qrngf 33 (38) ||||| T Consensus 24 Qrn~f 28 (56) T 1edi_A 24 QRNGF 28 (56) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99889 Done!