Query         537021.9.peg.54_1
Match_columns 64
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 22:03:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_54.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jqo_A Hypothetical protein YO  24.3      17 0.00073   16.9   0.6   32   19-56     71-103 (108)
  2 1s12_A Hypothetical protein TM  22.7      35  0.0015   15.3   1.9   38   20-57     48-94  (94)
  3 3mi9_C Protein TAT; P-TEFB, HI   8.2      86  0.0036   13.3   0.7   18    9-26     28-46  (86)
  4 3gre_A Serine/threonine-protei   6.9 1.3E+02  0.0054   12.3   1.1   22   27-48    237-258 (437)
  5 2e2s_A Agelenin; cystine knot,   6.1 1.2E+02   0.005   12.5   0.5   14   21-34     20-33  (36)
  6 1hym_B CMTI-V, hydrolyzed cucu   4.8 1.4E+02  0.0057   12.2   0.2   11   24-34      3-13  (26)
  7 2g0i_A Hypothetical protein SM   4.6 1.9E+02   0.008   11.5   1.3   35   21-55     98-145 (145)
  8 1tac_A TAT protein; transcript   4.5 1.3E+02  0.0054   12.4  -0.2   10   15-24     35-44  (86)
  9 1g1p_A Conotoxin EVIA; three d   4.4      81  0.0034   13.4  -1.2   14   12-25      8-21  (33)
 10 3f7f_A Nucleoporin NUP120; nuc   4.3 1.2E+02   0.005   12.5  -0.5   18   25-42    240-257 (729)

No 1  
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=24.26  E-value=17  Score=16.89  Aligned_cols=32  Identities=31%  Similarity=0.478  Sum_probs=23.4

Q ss_pred             HHCCEEEEEEEEEECHHHHHHHHCCCCE-EEEEEEEECC
Q ss_conf             4036048888986121377886302001-4689998328
Q 537021.9.peg.5   19 LKKGLLCCKIRIWNQRSQTILKSYRYKQ-VCKIQIIQEG   56 (64)
Q Consensus        19 lkkgllcckiriwnqrsqtilksyrykq-vckiqiiqeg   56 (64)
                      ||.|   -||++|-   ..||.||.-|- |-|+.|+-|.
T Consensus        71 LK~G---~KIKVW~---S~iLESyP~Km~V~KfEiv~~~  103 (108)
T 2jqo_A           71 LKRG---EKIKVWF---HTRKESNPPSATIQKYELLLEH  103 (108)
T ss_dssp             CCTT---EEEEEEE---EEEECSSSCEEEEEEEEECCSS
T ss_pred             CCCC---CEEEEEH---HHHHHHCCCCEEEEEEEEEEEC
T ss_conf             1268---8899855---7445218975088878765410


No 2  
>1s12_A Hypothetical protein TM1457; crystal, structural genomics, PSI, berkeley structural genomics center, BSGC, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.64.2.1
Probab=22.74  E-value=35  Score=15.30  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             HCCEEEEEEEEEECHHHHHHHHC---------CCCEEEEEEEEECCC
Q ss_conf             03604888898612137788630---------200146899983285
Q 537021.9.peg.5   20 KKGLLCCKIRIWNQRSQTILKSY---------RYKQVCKIQIIQEGS   57 (64)
Q Consensus        20 kkgllcckiriwnqrsqtilksy---------rykqvckiqiiqegs   57 (64)
                      +.|.+.|++.--++..|.+|++.         .|.+--++.+..+||
T Consensus        48 ~~G~l~~~~~~~~~~~q~ll~~~~~gL~~I~~~Yp~~Iki~v~e~~~   94 (94)
T 1s12_A           48 ESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS   94 (94)
T ss_dssp             ETTEEEEEECSCCHHHHHHHHHHHHHHHHHHHHSTTTEEEEECCCCC
T ss_pred             ECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             68999999579896899999999999999998666638999964899


No 3  
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=8.24  E-value=86  Score=13.25  Aligned_cols=18  Identities=28%  Similarity=0.429  Sum_probs=11.7

Q ss_pred             HHHHHH-HHHHHHCCEEEE
Q ss_conf             123442-078640360488
Q 537021.9.peg.5    9 KKSLYM-SLSFLKKGLLCC   26 (64)
Q Consensus         9 kkslym-slsflkkgllcc   26 (64)
                      |+.-|- -+-|++|||--.
T Consensus        28 K~Cc~HCq~CFl~KGLGIs   46 (86)
T 3mi9_C           28 KKCCFHCQVCFITKALGIS   46 (86)
T ss_dssp             TTGGGSSHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             0056674787730466623


No 4  
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=6.93  E-value=1.3e+02  Score=12.33  Aligned_cols=22  Identities=23%  Similarity=0.614  Sum_probs=11.1

Q ss_pred             EEEEEECHHHHHHHHCCCCEEE
Q ss_conf             8898612137788630200146
Q 537021.9.peg.5   27 KIRIWNQRSQTILKSYRYKQVC   48 (64)
Q Consensus        27 kiriwnqrsqtilksyrykqvc   48 (64)
                      .|++|+-|.+..+++++...-.
T Consensus       237 ~i~lWDlr~~~~~~~~~~~~~~  258 (437)
T 3gre_A          237 IIDIWDIRFNVLIRSWSFGDHA  258 (437)
T ss_dssp             CEEEEETTTTEEEEEEBCTTCE
T ss_pred             CCEEEECCCCCEEEEEECCCCC
T ss_conf             6459988889587888868988


No 5  
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=6.06  E-value=1.2e+02  Score=12.54  Aligned_cols=14  Identities=43%  Similarity=1.104  Sum_probs=11.1

Q ss_pred             CCEEEEEEEEEECH
Q ss_conf             36048888986121
Q 537021.9.peg.5   21 KGLLCCKIRIWNQR   34 (64)
Q Consensus        21 kgllcckiriwnqr   34 (64)
                      .||-|-...||+.+
T Consensus        20 sgl~ckel~iw~s~   33 (36)
T 2e2s_A           20 SGLKCKELSIWDSR   33 (36)
T ss_dssp             TTCCEEEEETTEEE
T ss_pred             CCCEEEEEEEEHHH
T ss_conf             78611221000233


No 6  
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=4.82  E-value=1.4e+02  Score=12.21  Aligned_cols=11  Identities=36%  Similarity=1.132  Sum_probs=7.7

Q ss_pred             EEEEEEEEECH
Q ss_conf             48888986121
Q 537021.9.peg.5   24 LCCKIRIWNQR   34 (64)
Q Consensus        24 lcckiriwnqr   34 (64)
                      -|-..|||-..
T Consensus         3 rcnrvriwvnk   13 (26)
T 1hym_B            3 RCNRVRIWVNK   13 (26)
T ss_dssp             CTTEEEEEEET
T ss_pred             CCCEEEEEECC
T ss_conf             42169999826


No 7  
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich, unknown function; 1.85A {Streptococcus mutans} SCOP: d.64.2.1 PDB: 2g0j_A
Probab=4.55  E-value=1.9e+02  Score=11.46  Aligned_cols=35  Identities=9%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             CCEEEEEEEE----EECHHHHHHHH---------CCCCEEEEEEEEEC
Q ss_conf             3604888898----61213778863---------02001468999832
Q 537021.9.peg.5   21 KGLLCCKIRI----WNQRSQTILKS---------YRYKQVCKIQIIQE   55 (64)
Q Consensus        21 kgllcckiri----wnqrsqtilks---------yrykqvckiqiiqe   55 (64)
                      .|.+-|.+..    .+...|.+|++         ..|.+-.+|++|+|
T Consensus        98 dGyl~v~l~~~~~~~~~~~q~LL~tm~~gL~~I~e~Yp~yIkIkvi~e  145 (145)
T 2g0i_A           98 GGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ  145 (145)
T ss_dssp             TCEEEEECTTCTTTTCHHHHHHHHHHHHHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             966999985788764789999999999999999986645479999839


No 8  
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=4.52  E-value=1.3e+02  Score=12.37  Aligned_cols=10  Identities=40%  Similarity=0.747  Sum_probs=7.2

Q ss_pred             HHHHHHCCEE
Q ss_conf             0786403604
Q 537021.9.peg.5   15 SLSFLKKGLL   24 (64)
Q Consensus        15 slsflkkgll   24 (64)
                      -+-|++|||-
T Consensus        35 q~CFl~KGLG   44 (86)
T 1tac_A           35 QVAFITKGLG   44 (86)
T ss_dssp             CCSCSSTTSS
T ss_pred             HHHHHHCCCC
T ss_conf             8877423656


No 9  
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=4.44  E-value=81  Score=13.39  Aligned_cols=14  Identities=50%  Similarity=0.857  Sum_probs=10.0

Q ss_pred             HHHHHHHHHCCEEE
Q ss_conf             44207864036048
Q 537021.9.peg.5   12 LYMSLSFLKKGLLC   25 (64)
Q Consensus        12 lymslsflkkgllc   25 (64)
                      -+-||..||.||-|
T Consensus         8 gfcslpilknglcc   21 (33)
T 1g1p_A            8 GFCSLPILKNGLCC   21 (33)
T ss_dssp             SBCCCSSSSCCCBT
T ss_pred             CCEECHHHCCCCCC
T ss_conf             51503333577100


No 10 
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=4.28  E-value=1.2e+02  Score=12.52  Aligned_cols=18  Identities=33%  Similarity=0.960  Sum_probs=12.6

Q ss_pred             EEEEEEEECHHHHHHHHC
Q ss_conf             888898612137788630
Q 537021.9.peg.5   25 CCKIRIWNQRSQTILKSY   42 (64)
Q Consensus        25 cckiriwnqrsqtilksy   42 (64)
                      -|++||||-.++.++..+
T Consensus       240 dh~LKiWnL~t~~~v~t~  257 (729)
T 3f7f_A          240 NCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             TCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEE
T ss_conf             873898886888605421


Done!