Query 537021.9.peg.54_1 Match_columns 64 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 22:03:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_54.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jqo_A Hypothetical protein YO 24.3 17 0.00073 16.9 0.6 32 19-56 71-103 (108) 2 1s12_A Hypothetical protein TM 22.7 35 0.0015 15.3 1.9 38 20-57 48-94 (94) 3 3mi9_C Protein TAT; P-TEFB, HI 8.2 86 0.0036 13.3 0.7 18 9-26 28-46 (86) 4 3gre_A Serine/threonine-protei 6.9 1.3E+02 0.0054 12.3 1.1 22 27-48 237-258 (437) 5 2e2s_A Agelenin; cystine knot, 6.1 1.2E+02 0.005 12.5 0.5 14 21-34 20-33 (36) 6 1hym_B CMTI-V, hydrolyzed cucu 4.8 1.4E+02 0.0057 12.2 0.2 11 24-34 3-13 (26) 7 2g0i_A Hypothetical protein SM 4.6 1.9E+02 0.008 11.5 1.3 35 21-55 98-145 (145) 8 1tac_A TAT protein; transcript 4.5 1.3E+02 0.0054 12.4 -0.2 10 15-24 35-44 (86) 9 1g1p_A Conotoxin EVIA; three d 4.4 81 0.0034 13.4 -1.2 14 12-25 8-21 (33) 10 3f7f_A Nucleoporin NUP120; nuc 4.3 1.2E+02 0.005 12.5 -0.5 18 25-42 240-257 (729) No 1 >2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} Probab=24.26 E-value=17 Score=16.89 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=23.4 Q ss_pred HHCCEEEEEEEEEECHHHHHHHHCCCCE-EEEEEEEECC Q ss_conf 4036048888986121377886302001-4689998328 Q 537021.9.peg.5 19 LKKGLLCCKIRIWNQRSQTILKSYRYKQ-VCKIQIIQEG 56 (64) Q Consensus 19 lkkgllcckiriwnqrsqtilksyrykq-vckiqiiqeg 56 (64) ||.| -||++|- ..||.||.-|- |-|+.|+-|. T Consensus 71 LK~G---~KIKVW~---S~iLESyP~Km~V~KfEiv~~~ 103 (108) T 2jqo_A 71 LKRG---EKIKVWF---HTRKESNPPSATIQKYELLLEH 103 (108) T ss_dssp CCTT---EEEEEEE---EEEECSSSCEEEEEEEEECCSS T ss_pred CCCC---CEEEEEH---HHHHHHCCCCEEEEEEEEEEEC T ss_conf 1268---8899855---7445218975088878765410 No 2 >1s12_A Hypothetical protein TM1457; crystal, structural genomics, PSI, berkeley structural genomics center, BSGC, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.64.2.1 Probab=22.74 E-value=35 Score=15.30 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=30.4 Q ss_pred HCCEEEEEEEEEECHHHHHHHHC---------CCCEEEEEEEEECCC Q ss_conf 03604888898612137788630---------200146899983285 Q 537021.9.peg.5 20 KKGLLCCKIRIWNQRSQTILKSY---------RYKQVCKIQIIQEGS 57 (64) Q Consensus 20 kkgllcckiriwnqrsqtilksy---------rykqvckiqiiqegs 57 (64) +.|.+.|++.--++..|.+|++. .|.+--++.+..+|| T Consensus 48 ~~G~l~~~~~~~~~~~q~ll~~~~~gL~~I~~~Yp~~Iki~v~e~~~ 94 (94) T 1s12_A 48 ESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS 94 (94) T ss_dssp ETTEEEEEECSCCHHHHHHHHHHHHHHHHHHHHSTTTEEEEECCCCC T ss_pred ECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 68999999579896899999999999999998666638999964899 No 3 >3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A Probab=8.24 E-value=86 Score=13.25 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=11.7 Q ss_pred HHHHHH-HHHHHHCCEEEE Q ss_conf 123442-078640360488 Q 537021.9.peg.5 9 KKSLYM-SLSFLKKGLLCC 26 (64) Q Consensus 9 kkslym-slsflkkgllcc 26 (64) |+.-|- -+-|++|||--. T Consensus 28 K~Cc~HCq~CFl~KGLGIs 46 (86) T 3mi9_C 28 KKCCFHCQVCFITKALGIS 46 (86) T ss_dssp TTGGGSSHHHHHHTTSCCC T ss_pred HHHHHHHHHHHHHCCCCCC T ss_conf 0056674787730466623 No 4 >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Probab=6.93 E-value=1.3e+02 Score=12.33 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=11.1 Q ss_pred EEEEEECHHHHHHHHCCCCEEE Q ss_conf 8898612137788630200146 Q 537021.9.peg.5 27 KIRIWNQRSQTILKSYRYKQVC 48 (64) Q Consensus 27 kiriwnqrsqtilksyrykqvc 48 (64) .|++|+-|.+..+++++...-. T Consensus 237 ~i~lWDlr~~~~~~~~~~~~~~ 258 (437) T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHA 258 (437) T ss_dssp CEEEEETTTTEEEEEEBCTTCE T ss_pred CCEEEECCCCCEEEEEECCCCC T ss_conf 6459988889587888868988 No 5 >2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta} Probab=6.06 E-value=1.2e+02 Score=12.54 Aligned_cols=14 Identities=43% Similarity=1.104 Sum_probs=11.1 Q ss_pred CCEEEEEEEEEECH Q ss_conf 36048888986121 Q 537021.9.peg.5 21 KGLLCCKIRIWNQR 34 (64) Q Consensus 21 kgllcckiriwnqr 34 (64) .||-|-...||+.+ T Consensus 20 sgl~ckel~iw~s~ 33 (36) T 2e2s_A 20 SGLKCKELSIWDSR 33 (36) T ss_dssp TTCCEEEEETTEEE T ss_pred CCCEEEEEEEEHHH T ss_conf 78611221000233 No 6 >1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Probab=4.82 E-value=1.4e+02 Score=12.21 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=7.7 Q ss_pred EEEEEEEEECH Q ss_conf 48888986121 Q 537021.9.peg.5 24 LCCKIRIWNQR 34 (64) Q Consensus 24 lcckiriwnqr 34 (64) -|-..|||-.. T Consensus 3 rcnrvriwvnk 13 (26) T 1hym_B 3 RCNRVRIWVNK 13 (26) T ss_dssp CTTEEEEEEET T ss_pred CCCEEEEEECC T ss_conf 42169999826 No 7 >2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich, unknown function; 1.85A {Streptococcus mutans} SCOP: d.64.2.1 PDB: 2g0j_A Probab=4.55 E-value=1.9e+02 Score=11.46 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=23.9 Q ss_pred CCEEEEEEEE----EECHHHHHHHH---------CCCCEEEEEEEEEC Q ss_conf 3604888898----61213778863---------02001468999832 Q 537021.9.peg.5 21 KGLLCCKIRI----WNQRSQTILKS---------YRYKQVCKIQIIQE 55 (64) Q Consensus 21 kgllcckiri----wnqrsqtilks---------yrykqvckiqiiqe 55 (64) .|.+-|.+.. .+...|.+|++ ..|.+-.+|++|+| T Consensus 98 dGyl~v~l~~~~~~~~~~~q~LL~tm~~gL~~I~e~Yp~yIkIkvi~e 145 (145) T 2g0i_A 98 GGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 145 (145) T ss_dssp TCEEEEECTTCTTTTCHHHHHHHHHHHHHHHHHHHHCTTTEEEEEEEC T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 966999985788764789999999999999999986645479999839 No 8 >1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1 Probab=4.52 E-value=1.3e+02 Score=12.37 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=7.2 Q ss_pred HHHHHHCCEE Q ss_conf 0786403604 Q 537021.9.peg.5 15 SLSFLKKGLL 24 (64) Q Consensus 15 slsflkkgll 24 (64) -+-|++|||- T Consensus 35 q~CFl~KGLG 44 (86) T 1tac_A 35 QVAFITKGLG 44 (86) T ss_dssp CCSCSSTTSS T ss_pred HHHHHHCCCC T ss_conf 8877423656 No 9 >1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A* Probab=4.44 E-value=81 Score=13.39 Aligned_cols=14 Identities=50% Similarity=0.857 Sum_probs=10.0 Q ss_pred HHHHHHHHHCCEEE Q ss_conf 44207864036048 Q 537021.9.peg.5 12 LYMSLSFLKKGLLC 25 (64) Q Consensus 12 lymslsflkkgllc 25 (64) -+-||..||.||-| T Consensus 8 gfcslpilknglcc 21 (33) T 1g1p_A 8 GFCSLPILKNGLCC 21 (33) T ss_dssp SBCCCSSSSCCCBT T ss_pred CCEECHHHCCCCCC T ss_conf 51503333577100 No 10 >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A Probab=4.28 E-value=1.2e+02 Score=12.52 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=12.6 Q ss_pred EEEEEEEECHHHHHHHHC Q ss_conf 888898612137788630 Q 537021.9.peg.5 25 CCKIRIWNQRSQTILKSY 42 (64) Q Consensus 25 cckiriwnqrsqtilksy 42 (64) -|++||||-.++.++..+ T Consensus 240 dh~LKiWnL~t~~~v~t~ 257 (729) T 3f7f_A 240 NCHLKIWDLTSFTLIQDY 257 (729) T ss_dssp TCEEEEEETTTTEEEEEE T ss_pred CCEEEEEECCCCCEEEEE T ss_conf 873898886888605421 Done!