RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.542_1 (54 letters) >gnl|CDD|35077 COG5518, COG5518, Bacteriophage capsid portal protein [General function prediction only]. Length = 492 Score = 25.8 bits (56), Expect = 2.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 17 LIPAMFSSLLLISLFDSYECVMMGFDY 43 L + S +L D+YEC +MGF Y Sbjct: 46 LKEILERSTILQQCLDAYECNIMGFGY 72 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.341 0.153 0.457 Gapped Lambda K H 0.267 0.0764 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 681,665 Number of extensions: 27265 Number of successful extensions: 157 Number of sequences better than 10.0: 1 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 11 Length of query: 54 Length of database: 6,263,737 Length adjustment: 27 Effective length of query: 27 Effective length of database: 5,680,294 Effective search space: 153367938 Effective search space used: 153367938 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.9 bits) S2: 51 (23.4 bits)