RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.542_1
         (54 letters)



>gnl|CDD|35077 COG5518, COG5518, Bacteriophage capsid portal protein [General
          function prediction only].
          Length = 492

 Score = 25.8 bits (56), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 17 LIPAMFSSLLLISLFDSYECVMMGFDY 43
          L   +  S +L    D+YEC +MGF Y
Sbjct: 46 LKEILERSTILQQCLDAYECNIMGFGY 72


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.341    0.153    0.457 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 681,665
Number of extensions: 27265
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 11
Length of query: 54
Length of database: 6,263,737
Length adjustment: 27
Effective length of query: 27
Effective length of database: 5,680,294
Effective search space: 153367938
Effective search space used: 153367938
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 51 (23.4 bits)