Query 537021.9.peg.563_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed May 25 00:53:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_563.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1quba5 g.18.1.1 (A:244-326) b 6.9 31 0.0022 15.9 -0.9 11 19-29 33-43 (76)
2 d1lwha1 b.71.1.1 (A:392-441) 4 6.2 34 0.0025 15.7 -1.0 11 19-29 2-12 (50)
3 d1s1ma1 c.23.16.1 (A:287-544) 5.1 1.3E+02 0.0096 12.9 1.9 10 9-18 218-227 (258)
4 d1vs6z1 d.325.1.2 (Z:1-70) Rib 5.0 66 0.0048 14.3 -0.2 19 2-20 32-50 (70)
5 d1vcoa1 c.23.16.1 (A:298-547) 4.2 1.3E+02 0.0098 12.9 0.9 11 8-18 213-223 (250)
6 d2j0141 d.325.1.2 (4:1-50) Rib 3.6 83 0.006 13.9 -0.6 15 4-18 33-47 (50)
7 d1exta3 g.24.1.1 (A:116-172) T 3.5 1.5E+02 0.011 12.7 0.6 25 3-27 9-33 (57)
8 d2nvna1 d.18.1.3 (A:1-121) Hyp 3.2 83 0.0061 13.9 -0.9 28 4-31 15-42 (121)
9 d2it9a1 d.18.1.3 (A:1-122) Hyp 2.7 99 0.0072 13.5 -0.9 28 4-31 13-40 (122)
10 d1pjca1 c.2.1.4 (A:136-303) L- 2.6 2.3E+02 0.016 11.8 0.9 15 2-16 127-141 (168)
No 1
>d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.87 E-value=31 Score=15.89 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=7.5
Q ss_pred HHHHHHHCCCC
Q ss_conf 34443111223
Q 537021.9.peg.5 19 PISFFCKEARW 29 (37)
Q Consensus 19 pisffckearw 29 (37)
-+|||||...=
T Consensus 33 ~VsffCknkek 43 (76)
T d1quba5 33 KVSFFCKNKEK 43 (76)
T ss_dssp EEEEEEEETTT
T ss_pred EEEEEECCCCC
T ss_conf 78999768200
No 2
>d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}
Probab=6.20 E-value=34 Score=15.70 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=6.0
Q ss_pred HHHHHHHCCCC
Q ss_conf 34443111223
Q 537021.9.peg.5 19 PISFFCKEARW 29 (37)
Q Consensus 19 pisffckearw 29 (37)
.|.|.|||...
T Consensus 2 ~~eflcke~k~ 12 (50)
T d1lwha1 2 KLEFLCKEDKF 12 (50)
T ss_dssp EEEEEEECSSE
T ss_pred CEEEEECCCEE
T ss_conf 61688644529
No 3
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=1.3e+02 Score=12.94 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=7.2
Q ss_pred HHCCEEEEEH
Q ss_conf 0173232400
Q 537021.9.peg.5 9 DEFPFFVGVA 18 (37)
Q Consensus 9 defpffvgva 18 (37)
...|||+|+-
T Consensus 218 ~~HPffvg~Q 227 (258)
T d1s1ma1 218 PNHPWFVACQ 227 (258)
T ss_dssp TTSSSEEEES
T ss_pred CCCCEEEEEC
T ss_conf 8997199965
No 4
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]}
Probab=4.95 E-value=66 Score=14.33 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=14.3
Q ss_pred EEEEECHHHCCEEEEEHHH
Q ss_conf 8996102017323240034
Q 537021.9.peg.5 2 VFVDISCDEFPFFVGVAPI 20 (37)
Q Consensus 2 vfvdiscdefpffvgvapi 20 (37)
+.+||+.+--|||.|-.-+
T Consensus 32 ~~vdi~s~~HPfyTG~q~~ 50 (70)
T d1vs6z1 32 LNLDVCSKCHPFFTGKQRD 50 (70)
T ss_dssp CCCBCCSSSCCBCCCCCTT
T ss_pred EEEEECCCCCCCCCCCEEE
T ss_conf 8887578888759297878
No 5
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=4.15 E-value=1.3e+02 Score=12.90 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=8.5
Q ss_pred HHHCCEEEEEH
Q ss_conf 20173232400
Q 537021.9.peg.5 8 CDEFPFFVGVA 18 (37)
Q Consensus 8 cdefpffvgva 18 (37)
-...|||||+-
T Consensus 213 l~~HPffvgvQ 223 (250)
T d1vcoa1 213 LKDHPFFLGLQ 223 (250)
T ss_dssp ETTSSSEEEES
T ss_pred CCCCCCEEEEC
T ss_conf 79998189965
No 6
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=3.57 E-value=83 Score=13.88 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=10.3
Q ss_pred EEECHHHCCEEEEEH
Q ss_conf 961020173232400
Q 537021.9.peg.5 4 VDISCDEFPFFVGVA 18 (37)
Q Consensus 4 vdiscdefpffvgva 18 (37)
+||+-.--|||.|-.
T Consensus 33 vdIcs~cHPFyTG~q 47 (50)
T d2j0141 33 VEVCSKCHPFYTGQQ 47 (50)
T ss_dssp CCSCCCCCSSSCCCS
T ss_pred EEECCCCCCCCCCEE
T ss_conf 888999978697809
No 7
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.45 E-value=1.5e+02 Score=12.71 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=16.9
Q ss_pred EEEECHHHCCEEEEEHHHHHHHHCC
Q ss_conf 9961020173232400344431112
Q 537021.9.peg.5 3 FVDISCDEFPFFVGVAPISFFCKEA 27 (37)
Q Consensus 3 fvdiscdefpffvgvapisffckea 27 (37)
-|.|+|.|..--|-.-+..||-++.
T Consensus 9 TV~ipC~e~q~TvC~ch~gFfl~~~ 33 (57)
T d1exta3 9 TVHLSCQEKQNTVCTCHAGFFLREN 33 (57)
T ss_dssp EEEECCBTTBCCEEEECTTEEEETT
T ss_pred EEEECCCCCCCCEEECCCCCEECCC
T ss_conf 3871450016814622456344588
No 8
>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c {Synechococcus sp. pcc 7942 [TaxId: 1140]}
Probab=3.18 E-value=83 Score=13.86 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=19.7
Q ss_pred EEECHHHCCEEEEEHHHHHHHHCCCCCC
Q ss_conf 9610201732324003444311122331
Q 537021.9.peg.5 4 VDISCDEFPFFVGVAPISFFCKEARWKD 31 (37)
Q Consensus 4 vdiscdefpffvgvapisffckearwkd 31 (37)
-|.+-++|++.||+.--|+=-.++-|.|
T Consensus 15 ~dp~~~~f~~LIGge~WAiELt~~E~~~ 42 (121)
T d2nvna1 15 WDETAHRYPGLVGTTDWAVELTAAEMAD 42 (121)
T ss_dssp EETTCSSCCEEEECSSCEEEECHHHHHH
T ss_pred ECCCCCCCCEEECCCCEEEECCHHHHHH
T ss_conf 7798787747981586102207999999
No 9
>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962 {Prochlorococcus marinus [TaxId: 1219]}
Probab=2.71 E-value=99 Score=13.52 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEECHHHCCEEEEEHHHHHHHHCCCCCC
Q ss_conf 9610201732324003444311122331
Q 537021.9.peg.5 4 VDISCDEFPFFVGVAPISFFCKEARWKD 31 (37)
Q Consensus 4 vdiscdefpffvgvapisffckearwkd 31 (37)
-|.+-+.|+|.+|+.-=|+=-.++-|.|
T Consensus 13 ~dp~~~~f~~LIGge~WAiELt~~E~~~ 40 (122)
T d2it9a1 13 FDSSRDNFSTLIGGETWAIELDKSEWKI 40 (122)
T ss_dssp EETTCSSCCEEEECSSEEEEECHHHHHH
T ss_pred ECCCCCCCCEEECCCCEEEEECHHHHHH
T ss_conf 7799888628980486456736899999
No 10
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}
Probab=2.64 E-value=2.3e+02 Score=11.83 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=9.6
Q ss_pred EEEEECHHHCCEEEE
Q ss_conf 899610201732324
Q 537021.9.peg.5 2 VFVDISCDEFPFFVG 16 (37)
Q Consensus 2 vfvdiscdefpffvg 16 (37)
|.||+++|.=--|-+
T Consensus 127 VIVDvaidqGG~~Et 141 (168)
T d1pjca1 127 VIVDVAVDQGGCVET 141 (168)
T ss_dssp EEEETTCTTCCSBTT
T ss_pred EEEEEECCCCCCCCC
T ss_conf 899844378986546
Done!