Query         537021.9.peg.568_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 22:23:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_568.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3cng_A Nudix hydrolase; struct  12.3      85  0.0036   14.4   1.8   16    8-24     28-44  (189)
  2 2yrv_A AT-rich interactive dom  11.5      50  0.0021   15.5   0.5   22    3-31     30-51  (117)
  3 2c5q_A RRAA-like protein YER01  11.4      82  0.0034   14.5   1.5   13   20-32    173-185 (240)
  4 3k4i_A Uncharacterized protein   9.4 1.1E+02  0.0045   13.9   1.5   13   20-32    169-181 (244)
  5 3noj_A 4-carboxy-4-hydroxy-2-o   7.3 1.5E+02  0.0062   13.2   1.5   13   20-32    168-180 (238)
  6 2e79_A Ginkbilobin-2; DUF26 fo   7.2 1.5E+02  0.0062   13.2   1.5   16    4-19     92-107 (108)
  7 2pcn_A S-adenosylmethionine:2-   7.2 1.5E+02  0.0064   13.2   1.5   13   20-32    140-152 (161)
  8 1j3l_A Demethylmenaquinone met   6.5 1.7E+02  0.0071   13.0   1.5   13   20-32    141-153 (164)
  9 3bbn_E Ribosomal protein S5; s   6.4 1.7E+02  0.0072   12.9   1.7   15   20-34    177-191 (308)
 10 3c8o_A Regulator of ribonuclea   6.3 1.7E+02  0.0073   12.9   2.2   13   20-32    142-154 (162)

No 1  
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=12.26  E-value=85  Score=14.43  Aligned_cols=16  Identities=63%  Similarity=1.267  Sum_probs=10.8

Q ss_pred             CCHH-EEEECCCCEEEEE
Q ss_conf             5221-0664168625670
Q 537021.9.peg.5    8 SPSC-FIHFANLPSVIVG   24 (45)
Q Consensus         8 spsc-fihfanlpsvivg   24 (45)
                      -|+| ++||.| |.++|+
T Consensus        28 C~~C~~~~y~~-p~v~v~   44 (189)
T 3cng_A           28 CPKCHTIHYQN-PKVIVG   44 (189)
T ss_dssp             ETTTTEEECCC-CEEEEE
T ss_pred             CCCCCCCCCCC-CCEEEE
T ss_conf             79999760899-985999


No 2  
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=11.47  E-value=50  Score=15.54  Aligned_cols=22  Identities=36%  Similarity=0.783  Sum_probs=14.6

Q ss_pred             CCEEECCHHEEEECCCCEEEEECCCCEEE
Q ss_conf             74683522106641686256707787499
Q 537021.9.peg.5    3 PGLILSPSCFIHFANLPSVIVGDKEGIVI   31 (45)
Q Consensus         3 pglilspscfihfanlpsvivgdkegivi   31 (45)
                      |+|+.+|||-      ..|-++ |+-+++
T Consensus        30 PaLVVsPsc~------d~v~vk-KD~~LV   51 (117)
T 2yrv_A           30 PALVISPSCN------DDITVK-KDQCLV   51 (117)
T ss_dssp             EEEEECCSSC------SSCCCC-TTCEEE
T ss_pred             EEEEECCCCC------CCEEEC-CCCEEE
T ss_conf             2588768888------750233-560899


No 3  
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae}
Probab=11.44  E-value=82  Score=14.51  Aligned_cols=13  Identities=46%  Similarity=0.800  Sum_probs=10.3

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      .+|+||.+|+|++
T Consensus       173 DiI~aD~dGVvVI  185 (240)
T 2c5q_A          173 DYIAGDNNGIVRI  185 (240)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             8899859987997


No 4  
>3k4i_A Uncharacterized protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC,; 1.69A {Pseudomonas syringae PV}
Probab=9.40  E-value=1.1e+02  Score=13.94  Aligned_cols=13  Identities=38%  Similarity=0.652  Sum_probs=9.2

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      .+|+||..|+|++
T Consensus       169 D~IvaD~dGVvvI  181 (244)
T 3k4i_A          169 DLMVCDGSGCVVV  181 (244)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             9899829986996


No 5  
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida F1}
Probab=7.34  E-value=1.5e+02  Score=13.24  Aligned_cols=13  Identities=38%  Similarity=0.976  Sum_probs=10.1

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|+||.+|+|++
T Consensus       168 D~IvaD~dGVvVI  180 (238)
T 3noj_A          168 DIVVADDDGVVVV  180 (238)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             9899849957998


No 6  
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=7.22  E-value=1.5e+02  Score=13.25  Aligned_cols=16  Identities=19%  Similarity=0.503  Sum_probs=10.7

Q ss_pred             CEEECCHHEEEECCCC
Q ss_conf             4683522106641686
Q 537021.9.peg.5    4 GLILSPSCFIHFANLP   19 (45)
Q Consensus         4 glilspscfihfanlp   19 (45)
                      |.++.++||+.|.+-|
T Consensus        92 ~~v~~~~C~lRY~~~~  107 (108)
T 2e79_A           92 ARVQLVDCFIQYEQRS  107 (108)
T ss_dssp             EEEEESSEEEEEESSC
T ss_pred             EEEECCCEEEEEECCC
T ss_conf             9998899799996997


No 7  
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain, 2-dimethylmenaquinone methyltransferase; 1.90A {Geobacillus kaustophilus HTA426}
Probab=7.18  E-value=1.5e+02  Score=13.18  Aligned_cols=13  Identities=23%  Similarity=0.662  Sum_probs=9.6

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|++|.+|++++
T Consensus       140 D~I~aD~dGVvvi  152 (161)
T 2pcn_A          140 AYVYADADGVVVA  152 (161)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEEECCEEEEE
T ss_conf             9999979958998


No 8  
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=6.53  E-value=1.7e+02  Score=12.96  Aligned_cols=13  Identities=23%  Similarity=0.815  Sum_probs=9.1

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|++|.+|+|++
T Consensus       141 D~i~aD~dGVvvi  153 (164)
T 1j3l_A          141 SFLLADEDGLLLL  153 (164)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             9999839928997


No 9  
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=6.43  E-value=1.7e+02  Score=12.93  Aligned_cols=15  Identities=53%  Similarity=0.709  Sum_probs=10.0

Q ss_pred             EEEEECCCCEEEEEE
Q ss_conf             256707787499984
Q 537021.9.peg.5   20 SVIVGDKEGIVIVCI   34 (45)
Q Consensus        20 svivgdkegivivci   34 (45)
                      -|+|||+.|.|=+-+
T Consensus       177 LVVVGNgnG~VG~G~  191 (308)
T 3bbn_E          177 IVVVGDKKGQVGVGV  191 (308)
T ss_dssp             EEEEECSSSEEEEEE
T ss_pred             EEEEECCCCCEEEEE
T ss_conf             999957999686787


No 10 
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=6.33  E-value=1.7e+02  Score=12.90  Aligned_cols=13  Identities=23%  Similarity=0.641  Sum_probs=10.0

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|++|.+|+|++
T Consensus       142 D~i~aD~dGVvvi  154 (162)
T 3c8o_A          142 EFVYADNNGIIVS  154 (162)
T ss_dssp             SEEEECSSCEEEE
T ss_pred             CEEEEECCCEEEE
T ss_conf             9999939908998


Done!