Query         537021.9.peg.568_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 21:01:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_568.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pkpa2 d.50.1.2 (A:4-77) Ribo  10.7      56  0.0041   14.1   1.7   15   20-34     33-47  (74)
  2 d2uube2 d.50.1.2 (E:5-73) Ribo  10.5      57  0.0042   14.1   1.7   15   20-34     27-41  (69)
  3 d2qale2 d.50.1.2 (E:9-77) Ribo   6.8      76  0.0056   13.5   1.0   14   20-33     27-40  (69)
  4 d1nxja_ c.8.7.1 (A:) Hypotheti   6.1   1E+02  0.0075   12.8   1.6   13   20-32    144-156 (156)
  5 d1j3la_ c.8.7.1 (A:) Demethylm   5.9 1.1E+02  0.0077   12.8   1.5   13   20-32    141-153 (164)
  6 d1r8ja2 c.23.1.5 (A:1-135) N-t   5.6 1.1E+02   0.008   12.7   1.3   11   18-28     77-87  (135)
  7 d1q5xa_ c.8.7.1 (A:) Regulator   5.2 1.2E+02  0.0086   12.6   2.2   13   20-32    141-153 (160)
  8 d2adca2 d.58.7.1 (A:444-531) P   5.0 1.1E+02  0.0077   12.8   0.9   18    6-23      6-23  (88)
  9 d1vi4a_ c.8.7.1 (A:) Hypotheti   4.6 1.3E+02  0.0096   12.3   1.5   13   20-32    142-154 (162)
 10 d1njha_ b.128.1.1 (A:) Hypothe   3.9 1.5E+02   0.011   12.0   1.5   18   25-42    100-117 (118)

No 1  
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.69  E-value=56  Score=14.15  Aligned_cols=15  Identities=47%  Similarity=0.534  Sum_probs=11.2

Q ss_pred             EEEEECCCCEEEEEE
Q ss_conf             256707787499984
Q 537021.9.peg.5   20 SVIVGDKEGIVIVCI   34 (45)
Q Consensus        20 svivgdkegivivci   34 (45)
                      -|+|||+.|.|=.-+
T Consensus        33 ~VvvGn~~G~vG~G~   47 (74)
T d1pkpa2          33 LVVVGDKNGHVGFGT   47 (74)
T ss_dssp             EEEEECSSSEEEEEE
T ss_pred             EEEEECCCCCEEEEE
T ss_conf             999647999099877


No 2  
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.52  E-value=57  Score=14.10  Aligned_cols=15  Identities=40%  Similarity=0.609  Sum_probs=11.4

Q ss_pred             EEEEECCCCEEEEEE
Q ss_conf             256707787499984
Q 537021.9.peg.5   20 SVIVGDKEGIVIVCI   34 (45)
Q Consensus        20 svivgdkegivivci   34 (45)
                      -|+|||+.|.|=+-+
T Consensus        27 lvvvGn~~G~vG~G~   41 (69)
T d2uube2          27 LVVVGDRQGRVGLGF   41 (69)
T ss_dssp             EEEEECSSSEEEEEE
T ss_pred             EEEEECCCCCEEECC
T ss_conf             999978998492023


No 3  
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.75  E-value=76  Score=13.48  Aligned_cols=14  Identities=36%  Similarity=0.399  Sum_probs=10.3

Q ss_pred             EEEEECCCCEEEEE
Q ss_conf             25670778749998
Q 537021.9.peg.5   20 SVIVGDKEGIVIVC   33 (45)
Q Consensus        20 svivgdkegivivc   33 (45)
                      -|++||+.|.|=+-
T Consensus        27 lVvvGn~~G~vG~G   40 (69)
T d2qale2          27 LTVVGDGNGRVGFG   40 (69)
T ss_dssp             EEEEECSSSBCCEE
T ss_pred             EEEEECCCCCEEEE
T ss_conf             99946799819476


No 4  
>d1nxja_ c.8.7.1 (A:) Hypothetical protein Rv3853 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.09  E-value=1e+02  Score=12.83  Aligned_cols=13  Identities=31%  Similarity=0.774  Sum_probs=7.4

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|++|..|+|++
T Consensus       144 D~I~aD~dGvvvI  156 (156)
T d1nxja_         144 DIAYSDDDGIIVV  156 (156)
T ss_dssp             SEEEECSSCEEEC
T ss_pred             CEEEECCCEEEEC
T ss_conf             9999929959979


No 5  
>d1j3la_ c.8.7.1 (A:) Demethylmenaquinone methyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=5.91  E-value=1.1e+02  Score=12.78  Aligned_cols=13  Identities=23%  Similarity=0.815  Sum_probs=8.9

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|++|.+|+|++
T Consensus       141 D~i~aD~dGVvvi  153 (164)
T d1j3la_         141 SFLLADEDGLLLL  153 (164)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             9999939938997


No 6  
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}
Probab=5.64  E-value=1.1e+02  Score=12.70  Aligned_cols=11  Identities=36%  Similarity=1.126  Sum_probs=7.8

Q ss_pred             CCEEEEECCCC
Q ss_conf             86256707787
Q 537021.9.peg.5   18 LPSVIVGDKEG   28 (45)
Q Consensus        18 lpsvivgdkeg   28 (45)
                      ||.||+|++++
T Consensus        77 lPaViv~~~~~   87 (135)
T d1r8ja2          77 VPAIVVGDRDS   87 (135)
T ss_dssp             CCEEEESCCC-
T ss_pred             CCEEEEECCCC
T ss_conf             46899824887


No 7  
>d1q5xa_ c.8.7.1 (A:) Regulator of RNase E activity RraA (MenG) {Escherichia coli [TaxId: 562]}
Probab=5.24  E-value=1.2e+02  Score=12.55  Aligned_cols=13  Identities=23%  Similarity=0.555  Sum_probs=9.3

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      ..|+||.+|+|++
T Consensus       141 D~I~aD~dGvvVi  153 (160)
T d1q5xa_         141 DHLYADNTGIILS  153 (160)
T ss_dssp             CEEEECSSCEEEE
T ss_pred             CEEEEECCCEEEE
T ss_conf             9999909908998


No 8  
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98  E-value=1.1e+02  Score=12.77  Aligned_cols=18  Identities=33%  Similarity=0.779  Sum_probs=13.3

Q ss_pred             EECCHHEEEECCCCEEEE
Q ss_conf             835221066416862567
Q 537021.9.peg.5    6 ILSPSCFIHFANLPSVIV   23 (45)
Q Consensus         6 ilspscfihfanlpsviv   23 (45)
                      |..||.-++..|||.-+-
T Consensus         6 ~~pPs~tL~V~NLp~~~t   23 (88)
T d2adca2           6 IFPPSATLHLSNIPPSVS   23 (88)
T ss_dssp             CCCSCSEEEEECCCTTCC
T ss_pred             CCCCCCEEEEECCCCCCC
T ss_conf             899978899979998889


No 9  
>d1vi4a_ c.8.7.1 (A:) Hypothetical protein VC2366 {Vibrio cholerae [TaxId: 666]}
Probab=4.56  E-value=1.3e+02  Score=12.30  Aligned_cols=13  Identities=23%  Similarity=0.452  Sum_probs=9.1

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             2567077874999
Q 537021.9.peg.5   20 SVIVGDKEGIVIV   32 (45)
Q Consensus        20 svivgdkegiviv   32 (45)
                      -.|++|.+|+|++
T Consensus       142 D~i~aD~dGvvvi  154 (162)
T d1vi4a_         142 DYLYADWNGILMS  154 (162)
T ss_dssp             SEEEEETTEEEEE
T ss_pred             CEEEEECCCEEEE
T ss_conf             9999909958997


No 10 
>d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis [TaxId: 1423]}
Probab=3.91  E-value=1.5e+02  Score=12.03  Aligned_cols=18  Identities=28%  Similarity=0.388  Sum_probs=15.3

Q ss_pred             CCCCEEEEEEEECCCCHH
Q ss_conf             778749998421357222
Q 537021.9.peg.5   25 DKEGIVIVCIIISSLPFF   42 (45)
Q Consensus        25 dkegivivciiisslpff   42 (45)
                      |.+|-.-+++-||.-||-
T Consensus       100 d~~GrLavaLeiS~~PF~  117 (118)
T d1njha_         100 LPGGKLAISLQISEKPFT  117 (118)
T ss_dssp             ETTTTEEEEEEEESSCCC
T ss_pred             CCCCCEEEEEEECCCCCC
T ss_conf             889849999993377768


Done!