RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.568_1 (45 letters) >2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens} Length = 164 Score = 25.8 bits (56), Expect = 2.5 Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 1 MSPGLILSPSCFIHFANLPSVIVGDKEGIVIVCIII 36 MSP L+ H + + IVI+ + Sbjct: 1 MSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTV 36 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.149 0.475 Gapped Lambda K H 0.267 0.0497 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 418,889 Number of extensions: 12290 Number of successful extensions: 40 Number of sequences better than 10.0: 1 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 5 Length of query: 45 Length of database: 5,693,230 Length adjustment: 18 Effective length of query: 27 Effective length of database: 5,256,838 Effective search space: 141934626 Effective search space used: 141934626 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.6 bits)