RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.568_1
         (45 letters)



>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA
          binding protein; 2.75A {Homo sapiens}
          Length = 164

 Score = 25.8 bits (56), Expect = 2.5
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 1  MSPGLILSPSCFIHFANLPSVIVGDKEGIVIVCIII 36
          MSP L+       H   +   +      IVI+   +
Sbjct: 1  MSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTV 36


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.149    0.475 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 418,889
Number of extensions: 12290
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 5
Length of query: 45
Length of database: 5,693,230
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,256,838
Effective search space: 141934626
Effective search space used: 141934626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.6 bits)